BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941132
Length=890
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16390.1 | Symbols: CAC1, CAC1A, BCCP, BCCP1 | chloroplastic... 1395 0.0
> AT5G16390.1 | Symbols: CAC1, CAC1A, BCCP, BCCP1 | chloroplastic
acetylcoenzyme A carboxylase 1 | chr5:5360801-5363126 REVERSE
LENGTH=1246
Length=1246
Score = 1395 bits (755), Expect = 0.0
Identities = 850/894 (95%), Gaps = 14/894 (2%)
Strand=Plus/Plus
Query 1 CCAACAACAACAAGAATAAGAATGGCGTCTTCGTCGTTCTCTGTCACATCTCC-G--GCT 57
|||| ||||| ||||| | |||||||||||||||||||||| ||||||||||| | |||
Sbjct 86 CCAATAACAATAAGAAGACGAATGGCGTCTTCGTCGTTCTCAGTCACATCTCCAGCTGCT 145
Query 58 GCTGCTTCCGTCTATGCAGTCACTCAAACCTCATCGCACTTCCCAGTCCCAAACCGCTCT 117
|||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||
Sbjct 146 GCTGCTTCCGTCTATGCAGTCACTCAAACCTCCTCGCACTTCCCAATCCAAAACCGCTCT 205
Query 118 CGCAGAGTTACTTTCCGTCTCTCTGCTAAGCCCAAGCTTCGCTTTCTCTCCAAGCCTAGT 177
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 206 CGCAGAGTTTCTTTCCGTCTCTCTGCTAAGCCCAAGCTTCGCTTTCTCTCCAAGCCTAGT 265
Query 178 CGCAGTAGCTACCCTGTGGTGAAGGCACAATCTAACAAGGTTAGTACTGGTGCATCATCA 237
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 266 CGCAGTAGCTACCCTGTGGTGAAAGCACAATCTAACAAGGTTAGTACTGGTGCATCATCA 325
Query 238 AATGCTGCCAAAATTGATGGGCCATCAGCAGCTGAAGGAAAGGAGAAAACCTCGTTGAAG 297
|||||||||||| |||||||||||||| ||||||||||||||||||||| ||| ||||||
Sbjct 326 AATGCTGCCAAAGTTGATGGGCCATCATCAGCTGAAGGAAAGGAGAAAAACTCATTGAAG 385
Query 298 GACTCGTCTTCTTCTTCATCTTCTTCACCTGAATTAGCTACAGAAGAGTCTATTTCTGAG 357
|| ||| ||| | | ||||| | |||||||||||||||||||||||||||||||||
Sbjct 386 GA---GTCGTCTGC-T--TCTTC-T--CCTGAATTAGCTACAGAAGAGTCTATTTCTGAG 436
Query 358 TTCCTTACCCAAGTAACAACTCTTGTCAAGCTTGTGGATTCGAGAGACATCGTCGAGTTG 417
||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||
Sbjct 437 TTCCTTACCCAAGTAACAACTCTTGTCAAGCTTGTGGATTCAAGAGACATTGTTGAGTTG 496
Query 418 CAGTTGAAACAACTTGACTGTGAACTAGTCATTCGaaaaaaaGAAGCCTTACCTCAACCT 477
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 CAGTTGAAACAACTCGACTGTGAACTAGTCATTCGAAAAAAAGAAGCCTTACCTCAACCT 556
Query 478 CAAGCTCCTGCATCTTATGTTATGATGCAGCAACCAAATCAACAATCTTATGCACAACAA 537
||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||
Sbjct 557 CAAGCTCCTGCATCTTATGTTATGATGCAGCAACCAAATCAACCATCTTATGCCCAGCAA 616
Query 538 ATGGCTCCTCC-GCCTGCACCTGCTGCTGCCTCACCAGCCCCTTCTACGCCAGCCTCCCT 596
||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 617 ATGGCTCCTCCTG-CTGCACCTGCTGCTGCCGCACCAGCCCCTTCTACGCCAGCCTCTCT 675
Query 597 GCCTCCACCATCCCCACCTACTCCAGCCAAATCATCGCTTCCTACGGTTAAAAGCCCCAT 656
||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 676 GCCTCCACCATCCCCACCTACTCCAGCCAAATCGTCACTTCCTACTGTTAAAAGCCCCAT 735
Query 657 GGCTGGCACATTCTACCGTAGTCCTGCACCTGGTGAACCACCCTTTATTAAGGTTGGAGA 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 GGCTGGCACATTCTACCGTAGTCCTGCACCTGGTGAACCACCCTTTATTAAGGTTGGAGA 795
Query 717 CAAAGTACAGAAGGGGCAAGTTCTATGCATTGTTGAAGCCATGAAGTTAATGAATGAAAT 776
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 CAAAGTGCAGAAGGGGCAAGTTCTATGCATTGTTGAAGCCATGAAGTTAATGAATGAAAT 855
Query 777 AGAGTCTGACCATACAGGAACCGTAGTCGATATTGTCGCAGAAGACGGCAAGCCTGTCAG 836
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 856 AGAGTCTGACCATACCGGAACCGTAGTCGATATTGTCGCAGAAGACGGCAAGCCTGTCAG 915
Query 837 CCTCGACACTCCTCTGTTTGTGGTTCAACCGTAGAATCGGCACCATGAGAAATG 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 CCTCGACACTCCTCTGTTTGTGGTTCAACCGTAGAATCGGCACCATGAGAAATG 969
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43452537155
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5