BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941153
Length=286
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16567.1 | Symbols: | unknown protein; Has 30201 Blast hits... 337 4e-92
> AT5G16567.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:5418891-5419085
FORWARD LENGTH=195
Length=195
Score = 337 bits (182), Expect = 4e-92
Identities = 192/196 (98%), Gaps = 3/196 (2%)
Strand=Plus/Plus
Query 21 ATGGGGCCTCAGGAATTGGCAAATTGTACCATGGGTTGGTTCAAATGCAATGGACAAGAC 80
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGCCTAAGGAATTGGCAAATTGTACCATGGGTTGGTTCAAATGCAATGGACAAGAC 60
Query 81 CGAAGATTGGGGAAGAATGAGATGTGGCATGAAGGTGTTGTAGTTGTCTCATTAACCAAC 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGAAGATTGGGGAAGAATGAGATGTGGCATGAAGGTGTTGTAGTTGTCTCATTAACCAAC 120
Query 141 AACAGTCATAGAGAGAGAGATGTGATGTACATTGTTCATAAGGGGGTCCATATCT-TTAT 199
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 121 AACAGTCATAGAGAGAGAGATGTGATGTACATTGTTCATAAGGGGGTCCATAT-TGTTAT 179
Query 200 ATT-AAAATTTGTTGA 214
||| ||||||||||||
Sbjct 180 ATTTAAAATTTGTTGA 195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13170150238
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5