BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941156
Length=1005
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16600.1 | Symbols: MYB43, AtMYB43 | myb domain protein 43 |... 1498 0.0
AT4G01680.2 | Symbols: MYB55 | myb domain protein 55 | chr4:716... 128 1e-28
> AT5G16600.1 | Symbols: MYB43, AtMYB43 | myb domain protein 43
| chr5:5438291-5440245 FORWARD LENGTH=1015
Length=1015
Score = 1498 bits (811), Expect = 0.0
Identities = 946/1007 (94%), Gaps = 25/1007 (2%)
Strand=Plus/Plus
Query 22 ATGGGGAGGCAACCATGTTGTGATAAAGTAGGGTTAAAGAAAGGGCCATGGACTATTGAA 81
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGAGGCAACCATGTTGTGACAAAGTAGGGTTAAAGAAAGGGCCATGGACTATTGAA 60
Query 82 GAAGACAAGAAGCTCATCAACTTCATCCTCACCAATGGCCATTGCTGTTGGAGAGCTCTT 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAGACAAGAAGCTCATCAACTTCATCCTCACCAATGGCCATTGCTGTTGGAGAGCTCTT 120
Query 142 CCCAAGCTTTCTGGACTATTGAGGTGTGGTAAAAGCTGCAGATTAAGATGGATAAATTAT 201
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCCAAGCTTTCTGGACTATTGCGGTGTGGTAAAAGCTGCAGATTAAGATGGATAAATTAT 180
Query 202 TTAAGACCTGATTTAAAAAGAGGCCTTTTATCAGAATATGAAGAACAAATGGTCATTGAT 261
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||
Sbjct 181 TTAAGACCTGATTTAAAAAGAGGTCTTTTATCAGAATATGAAGAACAAAAGGTCATTAAT 240
Query 262 CTCCATGCCCAACTTGGCAATAGATGGTCAAAGATTGCCTCTCATCTACCAGGAAGAACT 321
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTCCATGCGCAACTTGGCAATAGATGGTCAAAGATTGCCTCTCATCTACCAGGAAGAACT 300
Query 322 GATAATGAAATAAAGAACCATTGGAACACACACATAAAGAAAAAGCTAAGGAAGATGGGC 381
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 301 GATAATGAAATAAAGAACCATTGGAACACACACATAAAGAAAAAGCTAAGGAAAATGGGT 360
Query 382 ATTGACCCTTTGACCCATAAGCCTCTCTCTGAACATGAAGCTTCACAACAAGCTCAAGGG 441
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 ATTGACCCTTTGACCCATAAGCCTCTCTCTGAACAAGAAGCTTCACAACAAGCTCAAGGG 420
Query 442 AGCAAGAAAAGCTTCGGGCCTCATGATGACAAGAACCCAAAACAAGATCAAGAAGATCAA 501
|| |||||||| || | |||||||||||||||||||||||||||||||||| || | |||
Sbjct 421 AGAAAGAAAAGTTTAGTGCCTCATGATGACAAGAACCCAAAACAAGATCAACAA-ACCAA 479
Query 502 CAAACCAA-AGG--CGA-A-CAA---GAGCAAGATTTGGAGAAGAACAACACATCAGTTT 553
| || || | | | | | ||| ||||||| |||||||||||||||||||||||| |
Sbjct 480 -AGACGAACAAGAACAACATCAATTAGAGCAAGCTTTGGAGAAGAACAACACATCAGTGT 538
Query 554 CTAGTGATGGGTTTTGCATTGATGAAGTCCCATTGCTCAATCCACATGAGATCTTGATCG 613
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CTGGTGATGGGTTTTGCATTGATGAAGTCCCATTGCTCAATCCACATGAGATCTTGATCG 598
Query 614 ACATCTCTTCTTCTCATCATCATCATTCTAATGATGATAACGTCAATATCAACACTAGTA 673
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 599 ACATCTCTTCTTCTCATCATCATCATTCTAATGATGATAATGTCAATATCAACACTAGTA 658
Query 674 AATTTACTTCTCCTTCTTCCTCTTCCTCTTCTACCTCGTCTTGTATATCAGCAGTAGTAC 733
|||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||
Sbjct 659 AATTTACTTCTCCTTCTTCCTCTTCCTCTTCTACGTCGTCGTGTATATCATCAGTAGTAC 718
Query 734 CGGGTGATGAGTTCTCCAAGTTTTTTGATGAAATGGAGATTCTTGACCTCAAGTGGCTTT 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CGGGTGATGAGTTCTCCAAGTTTTTTGATGAAATGGAGATTCTTGACCTCAAGTGGCTTT 778
Query 794 CGTC-G--G--------GGG-ATAATAATAGCAAAGACGGCAAGTTCAACAACA---CTG 838
| || | | ||| | ||| |||||||||||||||||||||||||| |||
Sbjct 779 CATCCGATGATTCTTTAGGGGACGATATTAGCAAAGACGGCAAGTTCAACAACAGTACTG 838
Query 839 CTGATACAATGAACTTGTGGGACATCAATGATTTGAGCAGCTTGGATATGTTTATGAATG 898
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TTGATACGATGAACTTGTGGGACATCAATGATTTGAGCAGCTTGGATATGTTTATGAATG 898
Query 899 ACCATGATGATGGTTTTGTTGGAAATGGTAATGGATGTTCAAGAATGGTTTTAGATCAAG 958
| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 899 AACATGATGATGGTTTTATTGGAAATGGAAATGGATGTTCAAGAATGGTTTTAGATCAAG 958
Query 959 ATTCATGGACATTTGATCTCCTCTAGCTTTCAGTTTTTTCTTGATGT 1005
|||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 959 ATTCATGGACATTTGATCTCCTCTAGCTTTTAGTTTTTTCTTGATGT 1005
> AT4G01680.2 | Symbols: MYB55 | myb domain protein 55 | chr4:716021-717415
REVERSE LENGTH=1248
Length=1248
Score = 128 bits (69), Expect = 1e-28
Identities = 151/190 (79%), Gaps = 8/190 (4%)
Strand=Plus/Plus
Query 162 GAGGTGTGGTAAAAGCTGCAGATTAAGATGGATAAATTATTTAAGACCTGATTTAAAAAG 221
||| ||||| ||||| || ||||||||||||||||||||||||||||| ||||| || ||
Sbjct 177 GAGATGTGGAAAAAGTTGTAGATTAAGATGGATAAATTATTTAAGACCAGATTTGAAGAG 236
Query 222 AGGC-C-TTTTATCAGAATATGAAGAACAAA-TGGTCATTGATCTCCATGCCCAACTTGG 278
||| | |||| ||| | |||||||| || | | ||||| || |||||| |||||
Sbjct 237 AGGAGCATTTTCTCA-AG-ATGAAGAA-AATCTCATTATTGAACTTCATGCCGTTCTTGG 293
Query 279 CAATAGATGGTCAAAGATTGCCT-CTCATCTACCAGGAAGAACTGATAATGAAATAAAGA 337
|||||||||||| |||| || | | || || || |||||||| || |||||||| ||||
Sbjct 294 CAATAGATGGTCTCAGATAGC-TGCACAGCTTCCTGGAAGAACCGACAATGAAATCAAGA 352
Query 338 ACCATTGGAA 347
| | ||||||
Sbjct 353 ATCTTTGGAA 362
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49229464060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5