BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941166
Length=2266
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16690.1 | Symbols: ORC3, ATORC3 | origin recognition comple... 3568 0.0
> AT5G16690.1 | Symbols: ORC3, ATORC3 | origin recognition complex
subunit 3 | chr5:5474386-5479951 FORWARD LENGTH=2302
Length=2302
Score = 3568 bits (1932), Expect = 0.0
Identities = 2131/2228 (96%), Gaps = 10/2228 (0%)
Strand=Plus/Plus
Query 38 GGCGCCCTCCGGCACCGTCGCCGATCCTCCGCCATCG-TCAACCACCGATTCATTCAATC 96
||| |||||||||||||||||||||||||||| || | |||||||||||||||||||||
Sbjct 27 GGCACCCTCCGGCACCGTCGCCGATCCTCCGCAAT-GTTCAACCACCGATTCATTCAATT 85
Query 97 CCGGCGACACAGCAGAGAGTGATATTCGGCCATTTTTTGTACTCCACAAGGCTTCTTCGT 156
|| ||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||
Sbjct 86 CCAGCGACACAGCAGAGAATGATATTCGGCCATTTTTTGTACTTCACAAGG---CTTCGT 142
Query 157 CTGGGAGTAATCTCAATGGGAAATTAACTGGCACAGGGAAAAGCAAGCGGAGGATCGAAT 216
|| | |||||| |||||||||||||||||| | | |||||||||||||||||||||||
Sbjct 143 CT--G-GTAATCACAATGGGAAATTAACTGGGATTGTGAAAAGCAAGCGGAGGATCGAAT 199
Query 217 CACCTTCACCTAAAATTTCGAAGAGATCTGAGGTCGAAAGGGTGGAAGAAGAAGATGGCC 276
||||||||||||||||| | || ||||||||||||||||| |||||||| ||||||||||
Sbjct 200 CACCTTCACCTAAAATTGCTAAAAGATCTGAGGTCGAAAGCGTGGAAGAGGAAGATGGCC 259
Query 277 AGTTTTTCTCAACTCTTCGCTTTAAAGTTTTCGAGACTGTCTGGTCGAAAATCGAGAAGA 336
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 260 AGTTTTTCTCAACTCTTCGCTTTAAAGTTTTCGAGACTGTCTGGTCGAAAATCGAGAAAA 319
Query 337 CAATCGAAGACGTTCTGCGGAATTCGAACTCCAAAGTATTTAGTGGGATTCATGATTGGA 396
|||| ||||| || ||| | ||||||||||| ||||||||||||||||||||||||||||
Sbjct 320 CAATTGAAGATGTCCTGAGAAATTCGAACTCTAAAGTATTTAGTGGGATTCATGATTGGA 379
Query 397 TACGGGAATCATTTGAATCGATCATATCATCTGGAGCACTTAAGTTATCGGAAGCAGTTC 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 TACGGGAATCATTTGAATCGATCATATCATCTGGAGCACTTAAGTTATCGGAAGCAGTTC 439
Query 457 GATCTTATCCTGTTTTAACTCAGGCTTCTTCTAAGCAATTGCTTACTGCTATGGTTCTCA 516
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 440 GATCTTATCCTGTTTTAACTCAAGCTTCTTCTAAGCAATTGCTTACTGCAATGGTTCTCA 499
Query 517 CTAGGAATCTGGAAATGGTTGATGATTTATTGACATTTGAAGAACTGGAGTTGCATTTGA 576
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 500 CCAGGAATCTGGAAATGGTTGATGATTTATTGACATTTGAAGAACTGGAGTTGCACTTGA 559
Query 577 AGTCTCAAGGATGCCATGTGGCTAAGCTTTCATCTATGGACTTCTCAGCCAAGAGTGGTG 636
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 AGTCTCAAGGATGTCATGTGGCTAAGCTTTCATCTATGGACTTCTCAGCCAAGAGTGGTG 619
Query 637 TAGGAGGTTGCCTTAGTGGTTTGTTACGCCAGTTTGTGATGCCAACCATAGATGTGGCTG 696
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 620 TAGGAGGTTGCCTTAGAGGTTTGTTACGCCAGTTTGTGATGCCAACCGTAGATGTGGCTG 679
Query 697 ATGTGACCATTCTCGCATCATGGTACCGAGAAAGCAAAAACCATGAGAATCCCGTGGTTA 756
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 680 ATGTGACCATTCTCGCATCATGGTACAGAGAAAACAAAAACCATGAGAATCCCGTGGTTA 739
Query 757 TAATTGTGGATGATACAGAGAGATGCTGTGGGCCCGTACTGTCGGATTTAATTCTTATAT 816
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 740 TAATTGTGGATGATACAGAGAGATGCTGTGGTCCTGTACTGTCGGATTTAATTCTTATAT 799
Query 817 TAAGCGAATGGGCAGTCAAAGTTCCAAGTTTTT-TGATAATGGGTGTGTCCACAGCACAT 875
|||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 800 TAAGCGAATGGGCAATCAAAGTTCCAA-TTTTTCTGATAATGGGTGTGTCCACAGCACAT 858
Query 876 GATGCGCCTAGAAAGATATTATCAGTGAACGCGCTGCAAAGACTTTGTGCTACTAGGTTC 935
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 859 GATGCGCCTAGAAAGATATTATCAGTGAACGCGCTGCAGAGACTTTGTGCTACTAGGTTC 918
Query 936 ACTCTGAGTTCTCCGGCCGAACGGATGGATGCAGTTCTCAAGGCTGtttttttGAAGCCG 995
||| |||| || ||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 919 ACTTTGAGCTCCCCGGCTGAACGGATGGATGCAGTTCTCAAGGCTGTTTTCTTAAAGCCG 978
Query 996 TGTTCTGGGTTCACTGTTAGCCATAAGGTGGCACTTTTTATGAGAAGCTACTTTTTGTGT 1055
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 979 TGTTCTGGGTTCACTGTTAGCCATAAGGTGGCACTTTTTATGAGAAGTTACTTTTTGTGT 1038
Query 1056 CAAGATGGAACACTGACATCTTTTGTTAGAACTCTCAAGATAGCCTGTCTACAGCATTTC 1115
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1039 CAAGATGGAACACTGACATCTTTTGTTAGAACTCTCAAGATAGCCTGTCTACAACATTTC 1098
Query 1116 TCATTAGAGCCTTTAAGCATCATGCTCGAGCACTTGTGTCATGATGGTGTTAATCAGCTG 1175
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1099 TCATTAGAGCCTTTAAGCATCATGCTCGAGCACTTTTGTCATGATGGTGTTAATCAGCTG 1158
Query 1176 TCAGGTGAAGGTACTGGACTATTGACAGAAGCAACAATGAAACATGCCTTTGACTTGCCA 1235
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1159 TCAGGTGAAGGCACTGAACTATTGACAGAAGCAACAATGAAACATGCCTTTGACTTGCCA 1218
Query 1236 TCTGTGATGAGGAATAAAATTACTCGGAGTACTTTTGAAATGCTACCTCATTTTGTGATG 1295
||||||| |||||||||||||||||||||||| ||||||||||||||||||||| || ||
Sbjct 1219 TCTGTGACGAGGAATAAAATTACTCGGAGTACATTTGAAATGCTACCTCATTTTTTGTTG 1278
Query 1296 GACTTGCAAAGGATGCCAAGCCCCTGGAGCATAGTAGTTTTGTGCATATATGAAGCTGGA 1355
||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1279 GACTTGCAAAGGATGCCAAACCCCTGGAGCATAGTAGTTTTGTGCTTATATGAAGCTGGA 1338
Query 1356 AAGTTTGATAAACTTCGATTGCTAGACATATTCTGTGAGATACTTGACCCAGAAGCACGT 1415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1339 AAGTTTGATAAACTTCGATTGCTAGACATATTCTGTGAGATACTTGACCCAGAAGCACGT 1398
Query 1416 TACTTGAAATACTTTTCACCTTCGGAAATCGTTAACTCTCAGAGTCACAATTCAGGAAGT 1475
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1399 TACCTGAAATACTTTTCACCTTCGGAAATTGTTAACTCTCAGAGTCACAATTCAGGACGT 1458
Query 1476 AACAATGTTATCAGACGGGTTTTGCGCAAGCTCAGGGATCTTTCACCTTCACAGCTGTCT 1535
|| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1459 AATAATGTTATCCGACGGGTTTTGCGCAAGCTCAGGGATCTTTCACCTTCACAGCTGTCT 1518
Query 1536 AGCATGTTGAAAAGTTGGGAAAATCTCACTACGGAGTTCAGTGAGATCAATGACAAAGTA 1595
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1519 AGCATGTTGAAAAGTTGGGAAAATCTCACTGCGGAGTTCACTGAGATCAATGACAAAGTT 1578
Query 1596 ATGGAATTGCATCCGTTCATGAGATCTGTGGAAGCAGCTGGTCAGAGACAAGGACTTCCT 1655
|| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1579 ATTGAATTGCATCCGTTCATGAGAGCCGTGGAAGCAGCTGGTCAGAGACAAGGACTTCCT 1638
Query 1656 AACAGCCCAAAAAAGCATGCATCTCGAAGCCATGCAAAGCTTGAAAAGGAGCTTAAAGCC 1715
|||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||
Sbjct 1639 AACAGCCCAAAAAAGCATGCATCTCGAAGCAATTCAAAGCTTGAAAAAGAGCTTAAAGCC 1698
Query 1716 ATGACTGATAAGGTTGCCACAGTCATAGAATTCATGCTAAGGGAATATATGAAGCCAGTT 1775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1699 ATGACTGATAAGGTTGCCACAGTCATAGAATTCATGCTAAGGGAATATATGAAGCCAGTT 1758
Query 1776 GAGAGTGTTCCTTTCCACGAAATTTTGTGTTTCAAGAATGTCGATAAACTTCAATCTGCT 1835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1759 GAGAGTGTTCCTTTCCACGAAATTTTGTGTTTCAAGAATGTCGATAAACTTCAATCTGCT 1818
Query 1836 TTACTTGGAGACCCGAGAGGTAGGATCCAATTAGATCTACTAGAATCCCACAATATCCTC 1895
|||||||||||||||||||| |||||||||||||||||||| ||||| ||| ||||||||
Sbjct 1819 TTACTTGGAGACCCGAGAGGCAGGATCCAATTAGATCTACTGGAATCTCACGATATCCTC 1878
Query 1896 CACTGTGTGTGCTGCAGCCAGAGAGGCACAACTCTACTGCCTTCCATGCATGATACATCG 1955
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1879 CACTGTGTGTGCTGCAGCCAGAGAGGCACAACTCTACTGCCTTCCATGCATGATACATCG 1938
Query 1956 ATTTTGTACACGCTGGCGCAAGAGCACGCTGATGTCATTAACCTCCATGACTGGTATCAA 2015
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1939 ATTTTGTATAAACTGGCGCAAGAGCACGCTGATGTCATTAACCTCCATGACTGGTATCAA 1998
Query 2016 TCTTTCAAGACGATACTCATTCCCAAGAGTAGCAAGGCTAAACAAAAATCTAAGTCATCT 2075
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1999 TCTTTCAAGACGATACTTATTCCCCGGAGTAGCAAGGCTAAACAAAAATCTAAGTCATCT 2058
Query 2076 TCAAAATCGAAGAAACGGAAGGATATATGTGAAGAACCAGAAGCACCTGCTGAAGCTTTA 2135
|||||||| |||||||||||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 2059 TCAAAATCAAAGAAACGGAAGGAAATATGCGAAGAACCAGAAGCACCCGCTGAAGCTTTA 2118
Query 2136 ATTCAGGCTCGATTTTGCAGAGCTATAATGGAGCTTCAGATAGCAGGACTTATCCGCATG 2195
||||| |||||||||||||||||| | ||||||||||||||| |||||||||| ||||||
Sbjct 2119 ATTCAAGCTCGATTTTGCAGAGCTGTGATGGAGCTTCAGATAACAGGACTTATTCGCATG 2178
Query 2196 CCTTCAAAAAGACGGCCAGATTTTGTGCAAAGAGTGGCTTTTGGTTCTTAAGAATAGTTT 2255
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2179 CCTTCAAAAAGACGTCCAGATTTTGTGCAAAGAGTGGCTTTTGGTTCTTAAGAATAGTTT 2238
Query 2256 CAATACTT 2263
||||||||
Sbjct 2239 CAATACTT 2246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112449220800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5