BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941170
Length=2107
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16720.1 | Symbols: | Protein of unknown function, DUF593 |... 3090 0.0
AT1G70750.1 | Symbols: | Protein of unknown function, DUF593 |... 143 8e-33
> AT5G16720.1 | Symbols: | Protein of unknown function, DUF593
| chr5:5494228-5496810 FORWARD LENGTH=2357
Length=2357
Score = 3090 bits (1673), Expect = 0.0
Identities = 1969/2106 (93%), Gaps = 43/2106 (2%)
Strand=Plus/Plus
Query 1 AAGCAGAGGAGCCAAAATCAATGGCGGCCAACAATTTCGCGACGAAGCTAAGCAGAAACA 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 62 AAGCAGAGGAGCCAAAATCAATGGCGGCCAACAATTTTGCGACGAAGCTAAGCAGAAACA 121
Query 61 CCAATAGAATTACAGTAATCTTGGTCTACGCATTTCTTGAATGGCTTCTCATGTTCTTTA 120
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 122 CCAATAGAATTACCGTAATCTTGGTCTACGCATTCCTTGAATGGCTTCTCATGTTCTTTA 181
Query 121 TCTTCCTCAATTCCTTTTTCACTTACTTTATCGTCAAATTCGCTTCTTTCTTCGGTCTTA 180
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 182 TCTTCCTCAATTCCTTTTTCACTTACTTTATCGTCAAATTCGCCTCTTTCTTCGGTCTTA 241
Query 181 AGCAAGTATGTCTTCTCTGTCCGAAGCTAGATCGAATCTTCGAGCGAAACCCAGAAAATA 240
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 242 AGCAAGTATGTCTTCTCTGTCCGAAGCTAGATCGAATCTTCGAGCGAAAGCCAGAAAACA 301
Query 241 GATTCACTTACAGAGAGCTTTTATGTCAAAATCACATCGCCGAGCTCGCAAGTCTCAGTT 300
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 302 GATTCACTTACAAAGAGCTTTTATGTCAAAATCACATCGCCGAGCTCGCTAGTCTGAGTT 361
Query 301 TTTGCACAACTCACGGGAAATTATCCGAATCGGCGAACTTGTGCTCAGATTGCTCAAATC 360
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 362 TTTGCAGAACTCACGGGAAATTATCCGAATCGGCGAACTTATGCTCAGATTGCTCTAATC 421
Query 361 GTGAAGAAGAACAGAGCAACATTGGTTTAGGGTTTTGCACATGTTGTCAAAAGAGCTTGG 420
| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 422 GCGAAGAAGAACAGAGCAACATTGGTTTAGGTTTTTGCACATGTTGTCAGAAGAGCTTAG 481
Query 421 CGGATAAACCCTACCCTAATTACTTGCTTATCAAGTCATCAATTTGGGGGAAAACTTTGG 480
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 482 CGGATAAACCATACCCTAATTACTTGCTTCTCAAGTCATCAATTTGGGGGAAAACTTTGG 541
Query 481 GTGATAGAGAAAATGGAGGATTGATCTTAGAGATGATCGATGATGATAAATTTGGAGATG 540
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 GTGACAGAGAAGATGGAGGATTGATCTTAGAGATGATCGATGATGATAAATTTGGAGATG 601
Query 541 GGTTTGAGACAGAGAGAGAATCTTATCCCTTAGGGTTCTTCAGAGATAAAGCAGAAGAAG 600
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 GGTTTGAGATAGATAGAGAATCTTATCCCTTAGGGTTCTTCAGAGATAAAGCAGAAGAAG 661
Query 601 GAAAGAAGCAAGAGCAGCAGCAAAATGGTGAAGTGATTTCAGATGTTGAGAGCTATGGTT 660
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 662 GAAAGAAGCAAGACCAGCAGCAAAATGGTGAAGTGATTTCAGATGTTGAGAGTTATGGAT 721
Query 661 TAAGCCTGAGAGAAGTTTCTGAGGAAGACGGGTTAAGATCTATCATCAGCAATAATTCTC 720
||||| |||||||||| ||||| || || |||||||||||||||||||||||||||||||
Sbjct 722 TAAGCTTGAGAGAAGTGTCTGAAGAGGATGGGTTAAGATCTATCATCAGCAATAATTCTC 781
Query 721 CTGGGAACGAAGAAGGAACCCCAGAAGCTAAATCAAGAGTTTCAGAGGATGAACAAAGGG 780
|||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 782 CTGGGAACGAAG------C---------TAAATCAAGAGTTTCAGAGGATGAACAAAGGA 826
Query 781 ATGATGATACTAGCAATGTTGCCACATATGGGAAAGATCAAATTTCAGTGCATGTGGAAG 840
||||||| || ||||||||||||||||||||| ||||||||||||||| || ||| ||||
Sbjct 827 ATGATGACACAAGCAATGTTGCCACATATGGGGAAGATCAAATTTCAGGGCGTGTAGAAG 886
Query 841 AAAAAGAAGAAGGAACAGGAGGAGAAGATTTGTTGGATGACCAGTTTGAGAGCAAGAATT 900
|||||||||||| |||||||| || |||||||||| ||||||||||||||||||||||||
Sbjct 887 AAAAAGAAGAAGAAACAGGAGTAGCAGATTTGTTGTATGACCAGTTTGAGAGCAAGAATT 946
Query 901 TCACTTGTAGCCAAAAT-gaagaagaagaagaccatagagaagaaaagaCCAAGGAGCTT 959
||||| ||||||||| | |||||||||||||| |||||||||||| ||| |||||||||
Sbjct 947 TCACTGGTAGCCAAA-TCGAAGAAGAAGAAGAAGATAGAGAAGAAACGACTAAGGAGCTT 1005
Query 960 GATCCAGAAACTCCAACTTCAGTCAGTACTTTATTTAACAAGAAGCTTCTTTTTCTTGCT 1019
||||| |||||||||||||||||||||||||| ||||||||||| |||| ||||||||||
Sbjct 1006 GATCCGGAAACTCCAACTTCAGTCAGTACTTTGTTTAACAAGAAACTTCATTTTCTTGCT 1065
Query 1020 AGAAATGAGTATGCATCTACTGAAGATGCAGGAGATGGGAGTGTATTAGTGAGTGAGATG 1079
||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1066 AGAAATGAGTATGCAGCTGCTGAAGATGCAGGAGATGGGAATGTATTAGTGAGTGAGATG 1125
Query 1080 GACGATGGCGATCCTTTAAGGACTATTGAAAGGCTAAGAGAGACTGTGAGAGCAGAACAA 1139
|||| |||||||||||||||||||||||||||| | |||||||| |||||||||||||||
Sbjct 1126 GACGGTGGCGATCCTTTAAGGACTATTGAAAGGTTGAGAGAGACAGTGAGAGCAGAACAA 1185
Query 1140 GAAGCATTGCGAGATTTATATGCAGAGCTGGAAGAAGAAAGAAGCGCGTCTGCAATATCG 1199
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 GAAGCACTGAGAGATTTATATGCAGAGCTGGAAGAAGAAAGAAGCGCGTCTGCAATATCG 1245
Query 1200 GCTAACCAGACAATGGCGATGATCACGAGACTACAAGAAGAGAAAGCGAAAGTTCAAATG 1259
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1246 GCTAACCAGACAATGGCAATGATCACGAGGCTACAAGAAGAGAAAGCGAAAGTTCAGATG 1305
Query 1260 GAAGCGTTGCAGTATCAGAGAATGATGGAGGAACAAGCCGAGTATGATCAAGAAGCCTTG 1319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1306 GAAGCGTTGCAGTATCAGAGAATGATGGAGGAACAAGCCGAGTATGATCAAGAAGCCTTG 1365
Query 1320 CAGCTGTTGAATCATTTGATGGTGAAACGAGAGAAAGAGAAGGAACAACTCCAGAGAGAA 1379
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1366 CAGCTATTGAATCATTTGATGGTGAAACGAGAGAAAGAGAAGGAACAACTCCAGAGAGAA 1425
Query 1380 CTTGAGGTTTATCGGGCGAAGGTTTTGGAGTATGAATCGAAAGCTAAGAACAAAATCA-C 1438
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1426 CTTGAGGTTTATCGGGCAAAGGTTTTGGAGTATGAATCGAAAGCTAAGAACAAGATCATC 1485
Query 1439 AATTGCGGAAAGCAATGGTAAGGCTGCtgatgataataatgatactgatgatgatgataC 1498
||| ||||| | || | | || | | | |||||||||||||||
Sbjct 1486 G-TTGTGGAAAACGAT--T--G--TG---A-G--------G---CTGATGATGATGATA- 1522
Query 1499 TAAAGAGGAGGAAAATAGAGAAGAGGATAATTCTTCTGAGATGGATGTGGATTTGGAGAA 1558
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1523 -AA-GAGGAGGAGAATAGAGAAGAGGATAATTCTTCTGAGATGGATGTGGATTTGGAGAA 1580
Query 1559 GATAACATTGGATTGCGTACAACATATGAGCATGCTTGGTGAATCTTTATCAGAGTTTGA 1618
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1581 GATAACATTAGATTGCGTACAACATATGAGCATGCTTGGTGAATCTTTATCAGAGTTTGA 1640
Query 1619 GGAAGAGAGGTTAGTGATTTTGGATCAGCTTAAGGTGTTAGAGGAAAGGCTAGTAACAAT 1678
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1641 GGAAGAGAGGTTAGTGATTTTGGATCAGCTTAAGGTGTTAGAGGATAGGCTAGTAACAAT 1700
Query 1679 GCAGGACAATGAATCTGCTGAGGACCCTGGAGAATTCAGAAATAGTTATGAAGAAGAGAG 1738
||||||||| |||||||||||||| || ||||||||||| |||||||||||||||| |||
Sbjct 1701 GCAGGACAAGGAATCTGCTGAGGATCCGGGAGAATTCAGCAATAGTTATGAAGAAGCGAG 1760
Query 1739 TAATGGACATGAAGGGCTAACAATGGCATCAATGGCAAAGAGTTTGCTACCTCTTCTAGA 1798
||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1761 TAATGGACATGGAGGACTAACAATGGCATCAATGGCAAAGAGTCTGCTACCTCTTCTAGA 1820
Query 1799 CGCGGCAGAGAACGAATCGGAAGACGGGTCTCAAGAACTACCGGAATCCGATGAAAAGAA 1858
||| |||||||||||||| |||||||||||||||| |||||| ||||| |||||||||||
Sbjct 1821 CGCAGCAGAGAACGAATCAGAAGACGGGTCTCAAGGACTACCAGAATCAGATGAAAAGAA 1880
Query 1859 CTTTGGTTCAGACAGTGAGAAACTGGAGATCATCAAACAAGTTGATAGTGTCTATGAGAG 1918
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1881 CTTTGGTTCGGACAGTGAGAAACTGGAGATAATCAAACAAGTTGATAGTGTCTATGAGAG 1940
Query 1919 GTTACAAGTGCTGGAAACAGATGGAGAGTTTCTGAAAAACTGTATGAGTTCGGCGAAGAA 1978
|||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1941 GTTACAGGAGCTGGAAACAGATGGAGAGTTTCTGAAAAACTGTATGAGTTCAGCGAAGAA 2000
Query 1979 AGGTGACAAAGGAACAGATATTCTTAAAGATATATTGCAACATCTCCGCGATCTCAGAAC 2038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2001 AGGTGACAAAGGAACAGATATTCTTAAAGATATATTGCAACATCTCCGCGATCTCAGAAC 2060
Query 2039 AATTGAACTCACTGACACAATCGAAAACCAGACAACACAGGAAGAGTGATGTTTATTCAC 2098
|||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 2061 CATTGAACTCACTAACACAATTGAAAACCAGACGACACAGGAAGAGTGATGTTTATTCAC 2120
Query 2099 AAGAAT 2104
||||||
Sbjct 2121 AAGAAT 2126
> AT1G70750.1 | Symbols: | Protein of unknown function, DUF593
| chr1:26679975-26683204 REVERSE LENGTH=2957
Length=2957
Score = 143 bits (77), Expect = 8e-33
Identities = 130/155 (84%), Gaps = 6/155 (4%)
Strand=Plus/Plus
Query 1209 ACAATGGCGATGATCACGAGACTACAAGAAGAGAAAGC-GAAAGTTCAAATGGAAGCGTT 1267
|||||||||||||||| || | || || |||||||| | | | || |||||||||||
Sbjct 1399 ACAATGGCGATGATCAATAGGTTGCATGAGGAGAAAGCTGCGA-TGCAGATGGAAGCGTT 1457
Query 1268 GCAGTATCAGAGAATGATGGAGGAACAAGCCGAGTATGATCAAGAAGCCTTGCAGCTGTT 1327
|||||||||||||||||||||||| ||||| |||| |||||||||||| |||||| ||||
Sbjct 1458 GCAGTATCAGAGAATGATGGAGGAGCAAGCTGAGTTTGATCAAGAAGCTTTGCAGTTGTT 1517
Query 1328 GAATCAT-TTGATGGTGAA-ACGAGAGAAAGAGAA 1360
|||| | || |||||||| | ||||||| |||||
Sbjct 1518 GAATGAGCTT-ATGGTGAATA-GAGAGAAGGAGAA 1550
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104467334145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5