BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941178
Length=742
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16790.1 | Symbols: THO7, AtTHO7 | Tho complex subunit 7/Mft... 1177 0.0
> AT5G16790.1 | Symbols: THO7, AtTHO7 | Tho complex subunit 7/Mft1p
| chr5:5522495-5523963 REVERSE LENGTH=1009
Length=1009
Score = 1177 bits (637), Expect = 0.0
Identities = 707/741 (95%), Gaps = 4/741 (1%)
Strand=Plus/Plus
Query 4 AGAGTCTAGTAGTTAAGATGTCAGTGAGAGCTAGGAGGATTGTTTCTGGTAGGTCAGAGA 63
||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 144 AGACTCTAGTAGTTAAGATGTCAGTGAGAGCTAGGAGGATTGTTTCGGGTAGATCAGAGA 203
Query 64 CTGTAGCAGCTAATTATGCGTTCGATCCGCTAAATGATGACAAAATTATAAGAAATAGGC 123
||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||
Sbjct 204 CTGTAGCAGCTAATTATGCTTTCGATCCGTTACATGATGACAAAATTATAAGAAATAGGC 263
Query 124 TTCTCACACGCACGACCACCACCAGAGGTGAACCTCCATTGAAGAAGCTTCAGAAGAAAT 183
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 264 TTCTCACACGCACGACCACCACCAGAGGCGAACCTCCATTGAAGAAGCTTCAGAAGAAAT 323
Query 184 TCACTTCTTTCGTTATCGAACTAGACAAAGAAGAAGATAACTACAGTGAGTGTGGTAGGC 243
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 TCACTTCTTTTGTTATTGAACTAGACAAAGAAGAAGATAACTACAGTGAGTGTGGTAGGC 383
Query 244 TCGCCAAAGCTTTCTTGCAAGAACTTTCCGCTTTTGAGATTCCGCTTCTTAAGAGCCAAG 303
|||| |||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 384 TCGCGAAAGCTTTCTTGCAAGAACTCTCTGCGTTTGAGATTCCGCTTCTTAAGAGCCAAG 443
Query 304 CGGTTGTTGCTGCGAATCTTAGGGA-AAAGGAGAACTTCAACGAG-TTGAAAGACGAGAC 361
||||| ||||| ||||||||||| ||| |||||||| |||||| || ||||| |||||
Sbjct 444 TAGTTGTCGCTGCAAATCTTAGGGAGAAA-GAGAACTTTAACGAGCTT-AAAGATGAGAC 501
Query 362 GAATAGGCAGATAATGCAGGCACAAGCTGATATAGAAGATCTTAAGAAACAGCTTGTGGA 421
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 502 GAATAGGCAGATAATGCAGGCACAAGCTGATATAGAAGATCTTAAGAAACAGCTTGAGGA 561
Query 422 GAGTAAGATAGAGAGACAACACAAAGAGGAGTGTGAAGCCATTAGGAAACTTATCTCTGC 481
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 562 GAGTAAGATAGAGAGACAACAGAAAGAGGAGTGTGAAGCCATTAGGAAACTTATCTCTGC 621
Query 482 GCAGCCACCGAGGTCAGAGACACAGAAGGTTATACATGAATTGAAGAAGGAGATTGCAGA 541
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 622 GCAGCCACCGAGGTCAGAGACGCAGAAGGTTATACATGAATTGAAGAAGGAGATTGCAGA 681
Query 542 ACTCGAGGCTGAGAATACAGCAAGTTGGAGACTTCTTGAGCTAAGGAAGAAGCAGTTTGC 601
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 682 ACTCGAGGCTGAGAATACAGCAAGTTGGAGACTTCTTGAACTAAGGAAGAAGCAGTTTGC 741
Query 602 ACTGCTGTTGCATGTGGTGGATGAGTTGCAGGAGACAATGGAGGATGAACAGAAGAATAT 661
| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 742 ATTGTTGTTGCATGTGGTGGATGAGTTGCAGGAGACAATGGAGGATGAACAGAAGAGTAT 801
Query 662 GGTGGAAGAATTGCAGAGGAACATTACCGCCGATGGCGATGAAGCCATGTCCATCGATTA 721
|||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 802 GGTGGAAGAAATGCAGAGGAACATTACCGCTGATGGCGCTGAAGCCATGTCCATCGATTA 861
Query 722 GCTCCTAATCTTAGCTACTTT 742
||||||||||||||| |||||
Sbjct 862 GCTCCTAATCTTAGCAACTTT 882
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36017883399
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5