BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg941181

Length=230
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G16800.3 | Symbols:  | Acyl-CoA N-acyltransferases (NAT) sup...   171    3e-42


> AT5G16800.3 | Symbols:  | Acyl-CoA N-acyltransferases (NAT) superfamily 
protein | chr5:5524282-5526589 REVERSE LENGTH=1343
Length=1343

 Score =  171 bits (92),  Expect = 3e-42
 Identities = 123/137 (90%), Gaps = 6/137 (4%)
 Strand=Plus/Plus

Query  94   GAAACCATAACGATGTGTGGGGAAGACGGCAAAGCAATCAAGCAAGCAAGTACCTGTCCT  153
            ||| ||||||||||||||||||||||||||||||||||||||| |  || ||| | ||||
Sbjct  1    GAAGCCATAACGATGTGTGGGGAAGACGGCAAAGCAATCAAGC-A--AA-TACTTTTCCT  56

Query  154  TGCTCTTCTTTCTCCAAAAGTCGTTTCTTTTTGACATTTCTTTCGATTCCCACTTGACTC  213
            | |||||| |||||||||||||||||  |||| |||||||||||||||||||||||||||
Sbjct  57   TCCTCTTC-TTCTCCAAAAGTCGTTT-GTTTTCACATTTCTTTCGATTCCCACTTGACTC  114

Query  214  TGCGTGAAACCTTTGCA  230
            | || ||||||||||||
Sbjct  115  TCCGAGAAACCTTTGCA  131



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10355156294


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5