BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941190
Length=1573
Score E
Sequences producing significant alignments: (Bits) Value
AT5G16890.1 | Symbols: | Exostosin family protein | chr5:55516... 2374 0.0
> AT5G16890.1 | Symbols: | Exostosin family protein | chr5:5551629-5554917
FORWARD LENGTH=1747
Length=1747
Score = 2374 bits (1285), Expect = 0.0
Identities = 1481/1576 (94%), Gaps = 11/1576 (1%)
Strand=Plus/Plus
Query 1 TCGAATAATCAGATCTCGCAATGTTTGGGAAACAGCAAAATCATCGTTCTACTTCTTGCA 60
||||| || |||||||| |||||| ||| |||||||||||||||||||||||||| | ||
Sbjct 16 TCGAAGAAGCAGATCTCACAATGTCTGGAAAACAGCAAAATCATCGTTCTACTTCCTCCA 75
Query 61 GACCCAGATCCAAAACCCTAATCATCAT---ttctctcttctccgtctctctactgggca 117
||||||||||||||||||||||| |||| ||||||||| ||||||||||||| | ||
Sbjct 76 GACCCAGATCCAAAACCCTAATCCTCATCGGCTCTCTCTTCACCGTCTCTCTACTCGTCA 135
Query 118 tcctctacaccttc-tcttcctcctccCGACCCTCAATCTCCAA-CCTGAACCCGTCGGA 175
||||||||||| || ||||||||||||||| |||| |||||||| || |||||||||||
Sbjct 136 TCCTCTACACC-TCTTCTTCCTCCTCCCGAGCCTCCATCTCCAATCC-CAACCCGTCGGA 193
Query 176 CCAACCAGAGACGTCCTTCGTTACCTCGCTGGAGCATTTCTTAATCCAGAAAGCTCCGAA 235
|| ||||||||||||||||||||||||||| |||||||||||||| | |||||||||||
Sbjct 194 CCGACCAGAGACGTCCTTCGTTACCTCGCTTGAGCATTTCTTAATATATAAAGCTCCGAA 253
Query 236 GCTCTCGTTACCGGTTAGAGACGACACGGTGCGTGGCGAGAGTGATGATGATGCGAGGAA 295
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 254 GCTCTCGTTACCGGTTAGAGACGACACGGTGCGTGGCGAGAGTGATGATGATGTGAGGAA 313
Query 296 GCTCGATGAGATGGTTTTTGAGAGAGAGAATCGGTGGTTGAACGAAGATCCGGGATATCC 355
||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 314 GCTCGATGAGATGGTGTTCGAGAGAGAGAATCGTTGGTTGAACGAAGATCCGGGATATCC 373
Query 356 TGTTGGGTTTCCGATTAAGGTTTACGTGTATGAGATGCCGAAGAAGTTTACTTTCGATCT 415
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 TGTTGAATTTCCGATTAAGGTTTACGTGTATGAGATGCCGAAGAAGTTTACTTTCGATCT 433
Query 416 TCTCTGGTTATTTCACAATACTTACAAAGAGACTTCGAATGCTACCTCTAATGGTAGCCC 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 TCTCTGGTTATTTCACAATACTTACAAAGAGACTTCGAATGCTACCTCTAATGGTAGCCC 493
Query 476 TGTGCATCGTCTAATCGAACAGCATTCTATTGACTATTGGCTCTGGGCTGATCTGATCTC 535
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 494 TGTGCATCGTCTAATCGAACAGCATTCTATTGACTATTGGCTTTGGGCTGATCTGATATC 553
Query 536 TCCTGAATCCGAAAGGCGTTTAAAAAGTGTCGTGAGGGTTCATAAGCAGCAAGACGCCGA 595
||||||||| ||||||||||| |||||||||||||| ||||| |||||||| ||||||||
Sbjct 554 TCCTGAATCTGAAAGGCGTTTGAAAAGTGTCGTGAGAGTTCAGAAGCAGCAGGACGCCGA 613
Query 596 CTTTTTCTATGTTCCGTTCTTCACTACAATCAGCTTTTTCTTGTTGGAGAAGCAGCAATG 655
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 614 CTTTTTCTATGTTCCGTTTTTCACTACAATCAGCTTTTTCTTGTTGGAGAAGCAGCAATG 673
Query 656 CAAGGCACTCTATAGGGAAGCTTTGAAGTGGGTCACTGATCAGCCTGCTTGGAAGAGGTC 715
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 CAAAGCACTCTATAGGGAAGCTTTGAAGTGGGTCACTGATCAGCCTGCTTGGAAGAGGTC 733
Query 716 CGAGGGAAGGGATCACATATTTCCTATTCATCATCCCTGGTCCTTTAAGTCTGTCCGCAA 775
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 734 CGAGGGAAGGGATCACATATTTCCTATTCATCATCCTTGGTCCTTCAAGTCTGTCCGCAA 793
Query 776 ATTTGTGAAAAACGCAATCTGGCTTTTACCAGATATGGACTCCACTGGGAATTGGTATAA 835
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 794 ATTTGTGAAAAACGCAATCTGGCTTTTACCAGATATGGACTCCACTGGCAATTGGTATAA 853
Query 836 GCCTGGGCAAGTTTCATTGGAGAAAGACCTAATCCTTCCTTATGTTCCCAATGTTGATAT 895
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 854 GCCTGGGCAAGTTTCATTGGAGAAAGACCTAATTCTTCCTTATGTTCCCAATGTTGATAT 913
Query 896 CTGTGATGCCAAATGCTTGTCAGAAAGTGCACCGATGAGAACCACATTACTTTTCTTTC- 954
||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 914 CTGTGATACCAAATGCTTGTCAGAAAGTGCACCAATGAGAACCACATTACTTTT-TTTCC 972
Query 955 GAGGGCGCCTTAAGAGGAATGCTGGAGGTAAAATACGTGCCAAACTCGGTGCAGAACTAA 1014
||||||| |||||| | ||||| || |||||||||||||||||||| ||||||||| |||
Sbjct 973 GAGGGCGGCTTAAGCGAAATGCAGGGGGTAAAATACGTGCCAAACTTGGTGCAGAATTAA 1032
Query 1015 GTGGTGTCAAGGGTGTAATAATTTCTGAGGGGACTGCCGGAGAGGGAGGAAAATTGGCAG 1074
||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 GTGGTATCAAGGATATAATAATTTCTGAGGGGACTGCCGGAGAGGGAGGAAAATTGGCAG 1092
Query 1075 CTCAAGGTGGCATGCGTAGATCTTTATTCTGTTTGTGTCCTGCTGGTGACACACCATCTT 1134
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 CGCAACGTGGCATGCGTAGATCTTTATTCTGTTTGTGTCCTGCTGGTGACACACCATCTT 1152
Query 1135 CGGCGAGATTGTTTGATGCCATTGTCAGTGGCTGTATACCTGTTATAGTCAGTGACGAGT 1194
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 CAGCGAGGTTGTTTGATGCCATTGTCAGTGGCTGTATACCTGTTATAGTCAGTGACGAGT 1212
Query 1195 TGGAATTTCCTTTTGAAGGAATACTTGATTACAAGAAGGTTGCTGTGCTTGTTTCTTCCA 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 TGGAATTTCCTTTTGAAGGAATACTTGATTACAAGAAGGTTGCTGTGCTTGTTTCTTCCA 1272
Query 1255 GTGATGCTGTACAACCAGGGTGGCTTCTAAATCACCTAAGAAGCCTTACGCCCTTCCAAA 1314
||||||| |||| |||||||||||| |||| || || ||||| |||||||||||||||
Sbjct 1273 GTGATGCAATACAGCCAGGGTGGCTTGTAAACCATCTGAGAAGTCTTACGCCCTTCCAAG 1332
Query 1315 TCAAGGAGTTGCAGAAAAACCTTGCTCAATACTCGCGGCATTTCCTATATTCAAGCCCTG 1374
|||||| ||||||||| || |||||||||||||| || |||||||||||||| |||||||
Sbjct 1333 TCAAGGGGTTGCAGAATAATCTTGCTCAATACTCTCGCCATTTCCTATATTCGAGCCCTG 1392
Query 1375 CTCAGCCATTAGGTCCAGAGGACTTGACATGGAGAATGATGGCCGGAAAGCTAGTGAATA 1434
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1393 CTCAGCCATTAGGTCCAGAGGACTTGACATGGAGAATGATAGCCGGAAAGCTGGTGAATA 1452
Query 1435 TCAAGCTTCACACGAGAAGGTCACAGCGGGTCGTGAAAGGATCTAGGAGCCTTTGTAGAT 1494
|||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1453 TCAAGCTTCACACGAGGAGGTCACAGCGGGTCGTGAAAGGATCTAGGAGTATTTGCAGAT 1512
Query 1495 GCGATTGCTGGAAACCCAACTCCACAGCCATC-AATCCTTTGAATCCTCTCTTGTCTTAA 1553
|||||||||||| | ||||||| |||||| || ||| |||||| | ||||||||||||||
Sbjct 1513 GCGATTGCTGGAGATCCAACTCTACAGCC-TCCAATTCTTTGAGTTCTCTCTTGTCTTAA 1571
Query 1554 GACCTATAACTCTGAC 1569
|||| || ||||||||
Sbjct 1572 GACCGATCACTCTGAC 1587
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77660243115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5