BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg941195

Length=346
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G16950.1 | Symbols:  | unknown protein; Has 1807 Blast hits ...   473    4e-133


> AT5G16950.1 | Symbols:  | unknown protein; Has 1807 Blast hits 
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; 
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other 
Eukaryotes - 339 (source: NCBI BLink). | chr5:5572576-5573070 
FORWARD LENGTH=495
Length=495

 Score =  473 bits (256),  Expect = 4e-133
 Identities = 303/325 (93%), Gaps = 6/325 (2%)
 Strand=Plus/Plus

Query  2    ATTTGTTAGGCGATTAAAAATGGCAAGTGAAGAAGCAAAGGATCCATGGAAAGGAGAAGA  61
            ||| ||| ||||||| |||||||||||||| | |||||||||||||||||||||||||||
Sbjct  46   ATTCGTTGGGCGATTCAAAATGGCAAGTGAGGGAGCAAAGGATCCATGGAAAGGAGAAGA  105

Query  62   GTGGGGGACTGAGAATGAGAAGACGAAGAAGCCAACAAGTGGTGGTGGTGGTGTGAAAAC  121
            |||||| |||||||||||||||||||||||||||||||         |||||||||||||
Sbjct  106  GTGGGGAACTGAGAATGAGAAGACGAAGAAGCCAACAA------CAAGTGGTGTGAAAAC  159

Query  122  GGTGACGAGAGCGAGAAAACAAATACCGAGGGGACTTGAAGATAAATACGAAGCTTACTT  181
            ||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||
Sbjct  160  GGTGACGAGAGCGAGGAAACAAATACCGAGGGGACTTGAAGACAAGTACGAAGCTTACTT  219

Query  182  CCTCCCGCGAAAGCCATGGCCGAGGGCTCTTGCCTACTATGGAAGTTTTATCCTTGGTGG  241
            ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct  220  CCTCCCGCGAAAGCCATGGCCAAGGGCTCTTGCCTACTATGGAAGTTTCATCCTTGGTGG  279

Query  242  GATTGGTGCTGGTATGGTTATTGAAGCTTGGATCAACAAGAAAGTCAAAGAAGATGGAGG  301
            ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  280  GATCGGTGCTGGTATGGTTATTGAAGCTTGGATCAACAAAAAAGTCAAAGAAGATGGAGG  339

Query  302  AGTCATTTGGGAATTCGACAAGTGA  326
            |||||||||||||||||||||||||
Sbjct  340  AGTCATTTGGGAATTCGACAAGTGA  364



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16186215178


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5