BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941201
Length=1549
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17010.1 | Symbols: | Major facilitator superfamily protein... 2525 0.0
AT3G03090.1 | Symbols: AtVGT1, VGT1 | vacuolar glucose transpor... 1345 0.0
> AT5G17010.1 | Symbols: | Major facilitator superfamily protein
| chr5:5587351-5592446 REVERSE LENGTH=2040
Length=2040
Score = 2525 bits (1367), Expect = 0.0
Identities = 1481/1536 (96%), Gaps = 7/1536 (0%)
Strand=Plus/Plus
Query 2 TCGACTCACAGTCACAGCTATGGCGCTTGATCCT--G-AGCAGCAACCAATCTCCTCTGT 58
||| |||| | ||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 98 TCG-CTCA-AATCACAGCTATGGCGCTTGATCCTGAGCAGCAGCAACCAATCTCCTCTGT 155
Query 59 TTCCAGAGAGGTTGGTAAGTCAGATGGTGAGATCAGCGCAGAAAGGGAGCCTCTTATTAA 118
|||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 156 TTCCAGAGAGTTTGGTAAGTCATCTGGTGAGATCAGCCCAGAAAGGGAGCCTCTTATTAA 215
Query 119 AGAGAATCATACT-CCAGAAAACTACTCTGTGGTTGCAGCCATTCTCCCGTTTTTCTTTC 177
|||||||||| | ||||||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct 216 AGAGAATCAT-GTCCCAGAAAACTACTCTGTCGTTGCCGCCATTCTCCCGTTTTTATTTC 274
Query 178 CAGCTCTCGGAGGACTTCTTTATGGTTATGAAATTGGTGCAACTTCTTGTGCAACCATTT 237
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 275 CAGCTCTCGGAGGACTGCTTTATGGTTATGAAATTGGTGCAACTTCTTGTGCAACCATTT 334
Query 238 CACTTCAGTCGCCTTCATTAAGTGGAATATCATGGTACAACTTGTCCTCAGTGGATGTTG 297
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 335 CACTTCAGTCGCCTTCATTAAGTGGAATTTCATGGTACAACTTGTCCTCAGTGGATGTTG 394
Query 298 GTTTAGTTACCAGTGGCTCACTTTACGGTGCATTATTTGGCTCAATTGTGGCTTTCACTA 357
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 395 GTCTAGTTACCAGTGGCTCACTTTACGGTGCATTATTTGGCTCAATTGTGGCTTTTACTA 454
Query 358 TCGCTGACGTTATAGGAAGAAGAAAGGAGCTGATTTTGGCTGCATTATTGTATCTCGTTG 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 TCGCTGACGTTATAGGAAGAAGAAAGGAGCTGATTTTGGCTGCATTATTGTATCTCGTTG 514
Query 418 GAGCCCTTGTGACTGCACTAGCACCAACCTATTCCGTTTTGATAATTGGACGGGTTACTT 477
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||
Sbjct 515 GAGCCCTTGTGACTGCACTAGCCCCAACCTATTCCGTTCTGATAATTGGACGGGTTATTT 574
Query 478 ATGGGGTCTCAGTTGGACTGGCAATGCATGCGGCTCCGATGTACATTGCAGAGACTGCTC 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 ATGGGGTCTCAGTTGGACTGGCAATGCATGCGGCTCCGATGTACATTGCAGAGACTGCTC 634
Query 538 CAAGTCCGATACGTGGACAGCTGGTATCACTAAAAGAATTCTTCATAGTCCTTGGGATGG 597
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 635 CAAGTCCGATACGTGGACAGCTGGTATCATTAAAGGAATTCTTCATAGTCCTTGGGATGG 694
Query 598 TTGGAGGTTATGGAATCGGTAGTCTTACAGTCAATATTCATTCTGGTTGGCGGTACATGT 657
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 695 TTGGAGGTTATGGAATCGGTAGTCTTACAGTCAATGTTCATTCTGGTTGGCGATACATGT 754
Query 658 ATGCAACAAGTGTCCCTTTGGCAGTTATTATGGGAATTGGCATGTGGTGGCTCCCAGCAT 717
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 755 ATGCAACAAGTGTCCCTTTGGCAGTTATTATGGGAATTGGGATGTGGTGGCTCCCAGCAT 814
Query 718 CCCCTAGGTGGCTTTTGCTGCGCGTCATACAGGGGAAAGGGAATGTGGAGAACCAACGAG 777
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CCCCTAGGTGGCTTTTGTTGCGCGTCATACAGGGGAAAGGGAATGTGGAGAACCAACGAG 874
Query 778 AGTCTGCAATCAAATCTCTCTGCCGCCTTAGAGGCCCTGCTTTTGTTGATTCAGCTGCTG 837
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 875 AGGCTGCAATCAAATCTCTCTGCTGCCTTAGAGGCCCTGCTTTTGTTGATTCAGCTGCTG 934
Query 838 AACAAGTAAATGAGATTTTGGCTGAACTTACTTTTGTGGGAGAGGATAAAGAAGTCACTT 897
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
Sbjct 935 AACAAGTAAATGAGATTTTGGCTGAACTAACTTTTGTGGGCGAGGATAAAGAAGTCACAT 994
Query 898 TTGGTGAATTATTTCATGGGAAGTGCTTGAAAGCTCTCATCATAGGAGGAGGTCTAGTCT 957
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 995 TTGGTGAATTATTTCAAGGGAAGTGCTTGAAAGCTCTCATCATAGGAGGAGGTCTAGTCT 1054
Query 958 TGTTTCAACAGATAACTGGGCAACCAAGTGTGCTTTATTATGCACCATCAATACTGCAGA 1017
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1055 TGTTTCAGCAGATAACTGGACAACCAAGTGTGCTTTATTATGCACCATCAATACTGCAGA 1114
Query 1018 CCGCTGGCTTTTCTGCCGCAGGTGATGCAACAAGGGTCTCAATTCTACTTGGTCTATTGA 1077
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1115 CCGCTGGCTTTTCAGCCGCAGGTGATGCAACAAGGGTCTCAATTCTACTTGGTCTATTGA 1174
Query 1078 AGTTGATTATGACAGGAGTAGCTGTTGTAGTTATCGACAGACTTGGAAGGAGACCTTTAC 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1175 AGTTGATTATGACAGGAGTAGCTGTTGTAGTTATCGACAGACTTGGAAGGAGACCTTTAC 1234
Query 1138 TTCTTGGCGGTGTCAGTGGCATGGTTGTCTCATTATTCCTGCTAGGGTCATACTACCTCT 1197
||||||| || || ||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1235 TTCTTGGTGGAGTTGGTGGCATGGTTGTTTCATTATTCCTGCTGGGGTCATACTACCTCT 1294
Query 1198 TTTTCAGCGCCTCACCAGTTGTTGCTGTAGTTGCACTGCTGCTTTATGTGGGCTGTTACC 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1295 TTTTCAGCGCCTCACCAGTTGTTGCTGTAGTTGCACTGCTGCTTTATGTGGGCTGTTACC 1354
Query 1258 AGCTATCCTTTGGTCCAATTGGTTGGCTGATGATTTCAGAGATATTTCCCCTTAAATTAA 1317
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1355 AGCTATCTTTTGGTCCAATTGGTTGGCTGATGATTTCAGAGATATTTCCCCTTAAACTAA 1414
Query 1318 GAGGTCGAGGTCTCAGTCTGGCAGTGCTTGTGAATTTCGGTGCCAACGCACTTGTGACAT 1377
||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1415 GAGGTCGAGGTCTCAGTCTAGCAGTGCTTGTGAATTTTGGTGCAAACGCACTTGTGACAT 1474
Query 1378 TTGCTTTTTCACCCCTAAAGGAACTGTTGGGAGCTGGGATACTGTTTTGTGGGTTTGGTG 1437
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1475 TTGCGTTTTCACCCCTAAAGGAACTGCTGGGAGCTGGGATACTGTTTTGTGGGTTTGGTG 1534
Query 1438 TAATATGTGTGTTGTCTCTGGTCTTCATATTCTTCATTGTGCCAGAGACAAAGGGCCTCA 1497
| |||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1535 TGATATGTGTATTGTCTCTGGTATTCATATTCTTCATTGTGCCAGAGACAAAGGGTCTCA 1594
Query 1498 CTCTTGAGGAAATTGAAGCCAAATGTCTCTAAAAAA 1533
||||||||||||||||||||||||||||||||||||
Sbjct 1595 CTCTTGAGGAAATTGAAGCCAAATGTCTCTAAAAAA 1630
> AT3G03090.1 | Symbols: AtVGT1, VGT1 | vacuolar glucose transporter
1 | chr3:700456-704769 REVERSE LENGTH=1995
Length=1995
Score = 1345 bits (728), Expect = 0.0
Identities = 1224/1459 (84%), Gaps = 52/1459 (4%)
Strand=Plus/Plus
Query 99 GAAAGGGAGCCTCTTATTAAA-GAGAATCATA-CTCCAGAAAACTACTCTGTGGTTGCAG 156
|||| ||| ||| || ||||| || || || | | ||||| ||||||||||| ||||||
Sbjct 272 GAAAAGGAACCT-TTGTTAAAGGAAAACCACAGC-CCAGAGAACTACTCTGTTCTTGCAG 329
Query 157 CCATT-CTCCCGTTTTTCTTTCCAGCTCTCGGAGGACTT-CTTTATGGTTATGAAATTGG 214
||||| || |||||| ||||||||||||| |||| | || |||| |||||||||||||||
Sbjct 330 CCATTCCT-CCGTTTCTCTTTCCAGCTCTTGGAGCA-TTGCTTTTTGGTTATGAAATTGG 387
Query 215 TGCAACTTCTTGTGCAACCATTTCACTTCAGTCGCCTTCAT-TAAGTGGAATATCATGGT 273
|||||| |||||||| | ||| || ||| |||||||| | | |||||||||| |||||||
Sbjct 388 TGCAACATCTTGTGCTATCATGTCTCTTAAGTCGCCTAC-TCTAAGTGGAATTTCATGGT 446
Query 274 ACAACTTGTCCTCAGTGGATGTTGGTTTAGTTACCAGTGGCTCACTTTACGGTGCATTAT 333
|| ||||||| ||||||||||||||| || |||||||||||||||| || ||||| |||
Sbjct 447 ACGACTTGTCTTCAGTGGATGTTGGTATAATTACCAGTGGCTCACTGTATGGTGCCTTAA 506
Query 334 TTGGCTCAATTGTGGC-TTTCACTATCGCTGACGTTATAGGAAGAAGAAAGGAGCTGATT 392
||||||| ||||| || ||| | | | || ||| |||||||||| |||||||||||||||
Sbjct 507 TTGGCTCCATTGTTGCATTT-AGTGTTGCCGACATTATAGGAAGGAGAAAGGAGCTGATT 565
Query 393 TTGGCTGCATTATTGTATCTCGTTGGAGCCCTTGTGACTGCACTAGCACCAACCTATTCC 452
||||||||||| |||||||| ||||||||| ||||||||| | ||||||| || ||||
Sbjct 566 TTGGCTGCATTCTTGTATCTTGTTGGAGCCATTGTGACTGTAGTAGCACCTGTCTTTTCC 625
Query 453 GTTTTGATAATTGGACGGGTTACTTATGGGGTCTCAG-TTGGACTGGCAATGCATGCGGC 511
| ||||||||||||| ||||| ||||| | | |||||||| | ||||| |||||
Sbjct 626 ATACTGATAATTGGACGAGTTACGTATGGCAT-GGGGATTGGACTGACCATGCACGCGGC 684
Query 512 TCCGATGTACATTGCAGAGACTGCTCCAAGTCCGATACGTGGACAGCTGGTATCACTAAA 571
||| |||||||||||||||||||||||||||| |||||||||| | || ||||||||||
Sbjct 685 TCCAATGTACATTGCAGAGACTGCTCCAAGTCAAATACGTGGACGGATGATATCACTAAA 744
Query 572 AGAATTCTTCA-TAGTCCTTGGGATGGTTGGAGGTTATGGAATCGGTAGTCTTAC-AGTC 629
||||||| || | ||||||||||||||||| ||||||||||||||||| ||| | |
Sbjct 745 GGAATTCTCCACT-GTCCTTGGGATGGTTGGGGGTTATGGAATCGGTAGCCTTTGGATT- 802
Query 630 AATATTCATT-CTGGTTGGCGGTACATGTATGCAACAAGTGTCCCTTTGGCAGTTATTAT 688
| || ||| |||||||||| |||||||| ||||||| | ||||||| ||||||||||
Sbjct 803 ACGGTT-ATTTCTGGTTGGCGTTACATGTACGCAACAATTCTCCCTTTTCCAGTTATTAT 861
Query 689 GGGAATTGGCATGTGGTGGCTCCCAGCATCCCCTAGGTGGCTTTTGCTGCGCG-TCATAC 747
||||| ||| ||||| ||||| |||||||| || ||||||||||| ||||||| || | |
Sbjct 862 GGGAACTGGAATGTGTTGGCTACCAGCATCTCCGAGGTGGCTTTTACTGCGCGCTC-TCC 920
Query 748 AGGGGA-AAGGGAATGTGGAGAA-C--CAACGAGAGTCTGCAATCAAATCTCTCTGCCGC 803
|||| | |||| |||| |||||| | |||| || | |||| || | |||||| || |||
Sbjct 921 AGGG-ACAAGGAAATGGGGAGAATCTTCAAC-AG-G-CTGCGATTAGATCTCTTTGTCGC 976
Query 804 CTTAGAGGCCCTG-CTTTTGTTGATTCAGCTGCTGAACAAGTAAATGAGATTTTGGCTGA 862
|||||||| ||| | | | ||| ||||| |||||||||||||| || || ||||||||
Sbjct 977 CTTAGAGGGTCTGTCATA-GCTGACTCAGCAGCTGAACAAGTAAACGAAATATTGGCTGA 1035
Query 863 ACTTACTTTTGTGGGAGAGGATAAAGAAG-TCACTTTTGGTGAATTATTTC-ATGGGAAG 920
|||| | ||||||| || || ||||||| | || |||||||||||||||| | || ||
Sbjct 1036 ACTTTCCCTTGTGGGTGAAGACAAAGAAGCT-ACATTTGGTGAATTATTTCGA-GGCAAA 1093
Query 921 TGCTTGAAAGCTCTCA-TCATAGGAGGAGG-TCTAGTCTTGTTTCAACAGATAACTGGGC 978
|||||||||||||||| | |||| |||||| | |||||||||| ||||||||||||||||
Sbjct 1094 TGCTTGAAAGCTCTCACT-ATAGCAGGAGGGT-TAGTCTTGTTCCAACAGATAACTGGGC 1151
Query 979 AACCAAGTGTGCTTTATTATGCACCATCAATACTGCAGACCGCTGGCTTTTCTGCCGCAG 1038
|||||||||| || |||||||||||||||||||| ||||| || ||||||||||| ||||
Sbjct 1152 AACCAAGTGTACTATATTATGCACCATCAATACTACAGACTGCCGGCTTTTCTGCTGCAG 1211
Query 1039 GTGATGCAACAAGGGTCTCAATTCTACTTGGTCTATTGAAGTTGATTATGACAGGAGTAG 1098
||||||||| || |||||||||| || || |||||||||||| |||||||||||||
Sbjct 1212 CTGATGCAACTCGGATCTCAATTCTGCTCGGCCTATTGAAGTTGGTTATGACAGGAGTTT 1271
Query 1099 CTGTTG-TAGTTATCGACAGACTTGGAAGGAGACCTTTACTTCTTGGCGGTGTCAGTGGC 1157
|||| | |||||||||||||| ||||||||||||||||||||||| | ||||| || ||
Sbjct 1272 CTGT-GATAGTTATCGACAGAGTTGGAAGGAGACCTTTACTTCTTTGTGGTGTTAGCGGA 1330
Query 1158 ATGGTTG-TCTCATTATTCCTGCTAGGG-TCATACTACCTCTTTT-TCAGCGCCTCACCA 1214
||||| | ||||||| ||||| || ||| || |||||| | |||| | | | ||||
Sbjct 1331 ATGGT-GATCTCATTGTTCCTCCT-GGGATCCTACTACATGTTTTATAAAAATGT-ACCA 1387
Query 1215 GTTGTTGCTGTAGTTGCACTGCTGCTTTATGTGGGCTGTTACCAGCTATCCTTTGGTCCA 1274
| ||||||||||| |||| |||| || ||||| |||||||||||||| |||||||| ||
Sbjct 1388 GCTGTTGCTGTAGCTGCATTGCTACTGTATGTAGGCTGTTACCAGCTGTCCTTTGGCCCT 1447
Query 1275 ATTGGTTGGCTGATGATTTCAGAGATATTTCCCCTTAAA-TTAAGAGGTCGAGGTCTCAG 1333
||||||||||||||||||||||||||||||||| ||||| ||||||||| |||| ||||
Sbjct 1448 ATTGGTTGGCTGATGATTTCAGAGATATTTCCC-TTAAAATTAAGAGGTAGAGGAATCAG 1506
Query 1334 TCTGGCAGTGCTTGTGAATTTCGGTGCCAACGCACTTGTGACATTTGCTTTTTCACCCCT 1393
||| ||||||||||||||||| || || ||||||||||||||||| ||||| ||||| ||
Sbjct 1507 TCTAGCAGTGCTTGTGAATTTTGGCGCAAACGCACTTGTGACATTCGCTTTCTCACCGCT 1566
Query 1394 AAAGGAACTGTTGGGAGCTGGGATACTGTTTTGTGGGTTTGGTGTAATATGTGT-GTTGT 1452
|||||| ||||| |||||||| |||||||| |||| ||||| || |||||||| || ||
Sbjct 1567 AAAGGAGCTGTTAGGAGCTGGAATACTGTTCTGTGCATTTGGAGTGATATGTGTCGT-GT 1625
Query 1453 CTCTGGTCTTCATATTCTTCATTGTGCCAGAGACAAAGGGCCTCACTCTTGAGGAAATTG 1512
|||| ||||||||| || ||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1626 CTCTCTTCTTCATATACTACATTGTGCCAGAGACAAAGGGTCTCACTCTTGAAGAAATTG 1685
Query 1513 AAGCCAAATGTCTCTAAAA 1531
|||||||||||||||||||
Sbjct 1686 AAGCCAAATGTCTCTAAAA 1704
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76455430035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5