BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg941221

Length=409
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G17165.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   501    2e-141


> AT5G17165.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT3G03150.1); 
Has 39 Blast hits to 39 proteins in 11 species: Archae 
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:5643118-5647783 
REVERSE LENGTH=457
Length=457

 Score =  501 bits (271),  Expect = 2e-141
 Identities = 366/410 (89%), Gaps = 14/410 (3%)
 Strand=Plus/Plus

Query  1    AATATTTG-GTACAGAAACAGAGTTAATGGCAGCCAAATCGAAGAGCGTTCAGGTGATCG  59
            |||| ||| ||||||||| |||||||||||||||||||||||||| | |||||||| |||
Sbjct  57   AATA-TTGTGTACAGAAATAGAGTTAATGGCAGCCAAATCGAAGAACATTCAGGTGGTCG  115

Query  60   GGAAGCACATAGTCAACGGCGTTCGTTCACGCTCTTTCTCACGTGCCGTCGCATATGGTC  119
            ||| |||||||||||||||||||||||||||          |  ||||||||||||||||
Sbjct  116  GGAGGCACATAGTCAACGGCGTTCGTTCACG----------C--GCCGTCGCATATGGTC  163

Query  120  TCTTCAAGTCTCGGAATAATCACACATCGGGGTATGATAAGAACGTAGAGGAAGAATTGC  179
            |||||| |||||||||| ||||||| || | ||||||||||||||| |||||||||||||
Sbjct  164  TCTTCACGTCTCGGAATGATCACACGTCTGCGTATGATAAGAACGTCGAGGAAGAATTGC  223

Query  180  AGTCGAGTAAAGTGCCGGATGAATTGATAAAGCCCGACTCTGACAAATACTGGTCTCCCC  239
            |  ||||| ||||||| |||||| |||||||||| |||||||||||||| |||||||| |
Sbjct  224  AACCGAGTCAAGTGCCTGATGAAATGATAAAGCCTGACTCTGACAAATATTGGTCTCCTC  283

Query  240  ATCCTCAAACCGGTGTCTTTGGACCTTCCTCCTCCTCGACCGACACAAATGACGATTTTC  299
            |||| |||||||||||||||||||||||||||||||||||| || |||| ||||| ||||
Sbjct  284  ATCCCCAAACCGGTGTCTTTGGACCTTCCTCCTCCTCGACCAACGCAAAGGACGAATTTC  343

Query  300  GCGGCGGCCAGGAGGACTCAGTGATGGAGGAGAAAGCTTGGTTCCGTCCAACAAGTCTCG  359
            ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  344  GCGGCGGTCAGGAGGACTCAGTGATGGAGGAGAAAGCCTGGTTCCGTCCAACAAGTCTCG  403

Query  360  AGGATTTGGACAAGACTCACCATTCATAGCAAACAAACTCTTTCTATTAT  409
            | ||||||||||||||||||||||| |||||||||||||||| || ||||
Sbjct  404  AAGATTTGGACAAGACTCACCATTCGTAGCAAACAAACTCTTCCTTTTAT  453



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19353083365


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5