BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg941221 Length=409 Score E Sequences producing significant alignments: (Bits) Value AT5G17165.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 501 2e-141 > AT5G17165.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03150.1); Has 39 Blast hits to 39 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:5643118-5647783 REVERSE LENGTH=457 Length=457 Score = 501 bits (271), Expect = 2e-141 Identities = 366/410 (89%), Gaps = 14/410 (3%) Strand=Plus/Plus Query 1 AATATTTG-GTACAGAAACAGAGTTAATGGCAGCCAAATCGAAGAGCGTTCAGGTGATCG 59 |||| ||| ||||||||| |||||||||||||||||||||||||| | |||||||| ||| Sbjct 57 AATA-TTGTGTACAGAAATAGAGTTAATGGCAGCCAAATCGAAGAACATTCAGGTGGTCG 115 Query 60 GGAAGCACATAGTCAACGGCGTTCGTTCACGCTCTTTCTCACGTGCCGTCGCATATGGTC 119 ||| ||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 116 GGAGGCACATAGTCAACGGCGTTCGTTCACG----------C--GCCGTCGCATATGGTC 163 Query 120 TCTTCAAGTCTCGGAATAATCACACATCGGGGTATGATAAGAACGTAGAGGAAGAATTGC 179 |||||| |||||||||| ||||||| || | ||||||||||||||| ||||||||||||| Sbjct 164 TCTTCACGTCTCGGAATGATCACACGTCTGCGTATGATAAGAACGTCGAGGAAGAATTGC 223 Query 180 AGTCGAGTAAAGTGCCGGATGAATTGATAAAGCCCGACTCTGACAAATACTGGTCTCCCC 239 | ||||| ||||||| |||||| |||||||||| |||||||||||||| |||||||| | Sbjct 224 AACCGAGTCAAGTGCCTGATGAAATGATAAAGCCTGACTCTGACAAATATTGGTCTCCTC 283 Query 240 ATCCTCAAACCGGTGTCTTTGGACCTTCCTCCTCCTCGACCGACACAAATGACGATTTTC 299 |||| |||||||||||||||||||||||||||||||||||| || |||| ||||| |||| Sbjct 284 ATCCCCAAACCGGTGTCTTTGGACCTTCCTCCTCCTCGACCAACGCAAAGGACGAATTTC 343 Query 300 GCGGCGGCCAGGAGGACTCAGTGATGGAGGAGAAAGCTTGGTTCCGTCCAACAAGTCTCG 359 ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 344 GCGGCGGTCAGGAGGACTCAGTGATGGAGGAGAAAGCCTGGTTCCGTCCAACAAGTCTCG 403 Query 360 AGGATTTGGACAAGACTCACCATTCATAGCAAACAAACTCTTTCTATTAT 409 | ||||||||||||||||||||||| |||||||||||||||| || |||| Sbjct 404 AAGATTTGGACAAGACTCACCATTCGTAGCAAACAAACTCTTCCTTTTAT 453 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19353083365 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5