BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941228
Length=1312
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17230.3 | Symbols: PSY | PHYTOENE SYNTHASE | chr5:5659613-5... 1308 0.0
> AT5G17230.3 | Symbols: PSY | PHYTOENE SYNTHASE | chr5:5659613-5662865
REVERSE LENGTH=1943
Length=1943
Score = 1308 bits (708), Expect = 0.0
Identities = 767/796 (96%), Gaps = 2/796 (0%)
Strand=Plus/Plus
Query 519 GTTTGGTGTAGAAGAACTGATGAACTCGTCGATGGGCCTAATGCTTCACATATAACTCCC 578
|||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||
Sbjct 944 GTTTGGTGTAGAAGAACTGATGAACTTGTGGATGGGCCAAATGCTTCACATATAACTCCC 1003
Query 579 ATGGCTTTAGATAGATGGGAAGCAAGGTTAGAAGATCTTTTCCGTGGCCGTCCTTTCGAT 638
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1004 ATGGCTTTAGATAGATGGGAAGCAAGGTTAGAAGATCTTTTCCGTGGTCGTCCTTTCGAT 1063
Query 639 ATGCTAGATGCTGCTCTTGCTGATACAGTTGCTAGATACCCGGTCGATATTCAGCCATTT 698
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1064 ATGCTTGATGCTGCTCTCGCTGATACAGTTGCTAGATACCCGGTCGATATTCAGCCATTT 1123
Query 699 CGAGACATGATCGAAGGAATGAGAATGGACTTGAGGAAATCGAGATACCAGAACTTCGAT 758
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1124 CGAGACATGATCGAAGGAATGAGAATGGACTTGAAGAAATCGAGATACCAGAACTTCGAT 1183
Query 759 GATCTATACCTTTACTGCTACTATGTCGCTGGAACCGTCGGATTGATGAGCGTTCCGGTT 818
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1184 GATCTATACCTTTACTGCTACTACGTCGCTGGAACCGTCGGATTGATGAGCGTTCCGGTT 1243
Query 819 ATGGGAATCGATCCTAAGTCGAAAGCAACAACCGAAAGTGTTTACAACGCTGCCTTGGCC 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1244 ATGGGAATCGATCCTAAGTCGAAAGCAACAACCGAAAGTGTTTACAACGCTGCCTTGGCC 1303
Query 879 CTTGGTATAGCCAATCAGCTTACCAACATACTCAGAGACGTTGGCGAAGATGCGAGAAGA 938
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1304 CTTGGTATAGCCAATCAGCTTACTAACATACTCAGAGACGTAGGCGAAGATGCGAGAAGA 1363
Query 939 GGAAGGGTTTATCTGCCTCAGGATGAATTGGCTCAAGCTGGTCTTTCAGATGAAGACATA 998
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1364 GGAAGGGTTTATCTGCCTCAGGATGAATTGGCTCAGGCTGGTCTTTCAGATGAAGACATA 1423
Query 999 TTCGCCGGAAAAGTCACTGATAAATGGAGAAACTTCATGAAAATGCAGCTTAAGCGAGCA 1058
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1424 TTCGCCGGAAAAGTAACTGATAAATGGAGAAACTTCATGAAAATGCAGCTTAAACGAGCA 1483
Query 1059 AGAATGTTCTTCGATGAAGCTGAGAAAGGCGTCACCGAGCTCAGCGCCGCTAGCAGATGG 1118
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1484 AGAATGTTCTTCGACGAAGCTGAGAAAGGCGTCACCGAGCTCAGTGCCGCTAGCAGATGG 1543
Query 1119 CCAGTATGGGCATCGTTGCTATTGTACAGGAGAATATTGGACGAGATTGAAGCGAACGAT 1178
|| |||||||| || ||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1544 CCTGTATGGGCTTCATTGCTATTGTACAGGAGAATACTGGACGAGATTGAAGCGAATGAT 1603
Query 1179 TACAACAATTTCACTAAGAGAGCTTATGTGGGGAAAGTCAAGAAAATTGCAGCTTTGCCA 1238
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1604 TACAACAATTTTACTAAGAGAGCTTATGTGGGGAAAGTCAAGAAAATTGCAGCTTTGCCA 1663
Query 1239 TTGGCGTATGCTAAATCAGTGCTAAAGACTTCAAGCTCAAGATTATCAATATGAT--CGA 1296
||||| |||||||||||||| |||||||||||||| |||||| |||| |||||| |||
Sbjct 1664 TTGGCTTATGCTAAATCAGTACTAAAGACTTCAAGTTCAAGACTATCGATATGAGAGCGA 1723
Query 1297 GAGGAAAGTGGAACAA 1312
||||||||||||||||
Sbjct 1724 GAGGAAAGTGGAACAA 1739
Score = 797 bits (431), Expect = 0.0
Identities = 494/524 (94%), Gaps = 5/524 (1%)
Strand=Plus/Plus
Query 1 TCTCTCACTCTCTCAAGAACTTGAGTATGTCTTCTTCTGTAGCAGTGTTATGGGTTGCTA 60
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 378 TCTCTCACGCGCTCAAGAACTTGAGTATGTCTTCTTCTGTAGCAGTGTTATGGGTTGCTA 437
Query 61 CTTCTTCTCTGAATCCTGACCCAATGAACAATTGTGGGTTGGTAAGAGTTCTAGAATCTT 120
|||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 438 CTTCTTCTCTAAATCCAGACCCAATGAACAATTGTGGGTTGGTAAGGGTTCTAGAATCTT 497
Query 121 CTAGAATGTTCTCTCCTCT-TCAGAATCAGAGACTAAACAAAGGTAGGTGGAAGCAGACA 179
||||| ||||||||||| | |||||||||||||||||||||||||| | |||||||| |
Sbjct 498 CTAGACTGTTCTCTCCT-TGTCAGAATCAGAGACTAAACAAAGGTAAGAAGAAGCAGATA 556
Query 180 CCAACTTGGAGTTCTTCT---GTAATGAACCCAAGTAGAAGAAGTGGTGTTGTGTCTTCA 236
|||||||||||||||||| |||| ||||| ||||||||||| ||||||||||||||||
Sbjct 557 CCAACTTGGAGTTCTTCTTTTGTAAGGAACCGAAGTAGAAGAATTGGTGTTGTGTCTTCA 616
Query 237 AGTTTAGTAGCAAGTCCTTCAGGAGAGATAGCCCTCTCATCAGAAGAGAAGGTTTACAAT 296
|| ||||||||||||||||| ||||||||||| || ||||| ||||||||||||||||||
Sbjct 617 AGCTTAGTAGCAAGTCCTTCTGGAGAGATAGCTCTTTCATCTGAAGAGAAGGTTTACAAT 676
Query 297 GTTGTGCTGAAACAAGCTGCTTTGGTGAACAAACAGCTAAGGTCTTCTTCTTATGATCTT 356
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 677 GTTGTGTTGAAACAAGCTGCTTTGGTGAACAAACAGCTAAGGTCTTCTTCTTATGACCTT 736
Query 357 GATGTGAAGAAACCACAAGATGTTGTTCTTCCAGGGAGTTTGAGTTTGTTGGGTGAAGCT 416
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 737 GATGTGAAGAAACCACAAGATGTTGTTCTTCCTGGGAGTTTGAGTTTGTTGGGTGAAGCT 796
Query 417 TATGATCGATGCGGCGAAGTTTGCGCTGAATATGCTAAAACGTTTTATCTCGGAACTTTG 476
|||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 797 TATGATCGATGCGGTGAAGTTTGCGCTGAATATGCTAAGACGTTTTATCTTGGAACTTTG 856
Query 477 CTTATGACACCCGAAAGGCGAAAGGCGATTTGGGCTATCTACGT 520
||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 857 CTTATGACACCCGAAAGGCGAAAGGCGATTTGGGCAATCTACGT 900
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64557900870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5