BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941230
Length=2698
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17250.1 | Symbols: | Alkaline-phosphatase-like family prot... 3978 0.0
> AT5G17250.1 | Symbols: | Alkaline-phosphatase-like family protein
| chr5:5668900-5673516 REVERSE LENGTH=2871
Length=2871
Score = 3978 bits (2154), Expect = 0.0
Identities = 2388/2500 (96%), Gaps = 19/2500 (1%)
Strand=Plus/Plus
Query 210 GAACCAAAGCCATGGATGGATAAATTAACAATCTTGCAGAAGCTTGCATTTGCTAATAGA 269
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 307 GAACCAAAGCCATGGATGGATAAATTAACAATCTTGCAGACGCTTGCATTTGCTAAT-GA 365
Query 270 -TCATCTGCTAAGATCTTTAAGGCTTTTGCTGATCCTCCTACAACTAGTTTGCAGCGTCT 328
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 366 TTCATCTGCTAAGATCTTTAAGGCTTTTGCTGATCCTCCTACAACTAGTTTACAGCGTCT 425
Query 329 CAAGGGTTTAACAACTGGAGGATTGCCTACTTTTATCGATGTTGGGAATAGTTTCGGTGC 388
|||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 426 CAAGGGATTAACAACTGGAGGATTGCCTACTTTTATTGATATTGGGAATAGTTTCGGTGC 485
Query 389 TCCTGCTATCGTTGAGGATAACTTCATCAATCAGTTAGTGCTAAATGGGAAACGGTTGGT 448
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 486 TCCTGCTATTGTTGAGGATAACTTCATTAATCAGTTAGTGCTAAATGGGAAACGGTTGGT 545
Query 449 GATGATGGGTGATGATACTTGGACACAGTTGTTCCCAAATCAATTTCAAAAGTCATATCC 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 GATGATGGGTGATGATACTTGGACACAGTTGTTCCCAAATCAATTTCAAAAGTCATATCC 605
Query 509 TTTCCCCTCTTTCAATGTTAAAGACCTGGATACTGTTGATAATGGATGCATAGAGCACCT 568
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 606 TTTCCCCTCTTTCAATGTTAAAGACCTGGATACTGTTGACAATGGATGCATTGAGCACCT 665
Query 569 ATTCCCAACCCTTTACGAAGATGATTGGGATGTTCTCATTGCACATTTTCTCGGCGTGGA 628
|||||||||||||| | ||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 666 ATTCCCAACCCTTTTCAAAGATGATTGGGATGTTCTAATTGCGCATTTTCTCGGCGTGGA 725
Query 629 CCATGCAGGGCACATATATGGAGTGGATTCCAGCCCAATGATTAATAAGTTGGAGCAATA 688
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 CCATGCAGGACACATATTTGGAGTGGATTCCAGCCCAATGATTAATAAGTTGGAGCAATA 785
Query 689 TAATTCAGTTTTAGAGAAAGTCATCAATATATTGGAGAGCCAGGCGGGACCAGGTGGTTT 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 TAATTCAGTTTTAGAGAAAGTCATCAATATATTGGAGAGCCAGGCGGGACCAGGTGGTTT 845
Query 749 GCATGAGAATACTATGCTTATCGTAATGGGTGACCATGGGCAGACCTTAAATGGGGATCA 808
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 846 GCATGAGAATACTATGCTTATAGTAATGGGTGACCATGGGCAGACATTAAATGGGGATCA 905
Query 809 TGGCGGAGGGACTGCTGAAGAGGTAGAAACAACCATGTTTGCCATGAGTACAAAGAAGCA 868
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 TGGCGGAGGGACTGCAGAAGAGGTAGAAACAACCATGTTTGCCATGAGTACAAAGAAGCA 965
Query 869 TACAACTTTGGTTCCTCCTGAGTTCGATACCTCATCTTGTAAAGAAAACACGGATGGGAA 928
|||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||
Sbjct 966 CACAACTTTGGTTCCTCCTGAGTTCGATACCTCATCTTGTAAACAAAACAAGGACGGGAA 1025
Query 929 GCAGATTTGTATCAGCTCCATT--G-A-CTTGATTTTGCGGCAACATTGTCAGCTTTGCT 984
|||||| |||||||||| |||| | | ||||||||||| ||||||||||||||||||||
Sbjct 1026 GCAGATGTGTATCAGCTACATTGAGCAGCTTGATTTTGCAGCAACATTGTCAGCTTTGCT 1085
Query 985 TGGGATATCATTTCCTTTCGGAAGGTGCCTTCATTGGGCATGTCAACCCTGAGCTATATG 1044
||||||||| ||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1086 TGGGATATCCTTTCCTTTCGGAA---G----CATTGGGCATGTCAACCCTGAGCTATATG 1138
Query 1045 CCCTTGGTTCCAGCAGCTGGAATTTGGATAACTCTGATTTGGGCAATTTTGGCACCCAAT 1104
||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1139 CCCTTGGTTCCAGTAGCTGGAATTTGGATAAGTCAGATTTGGGCAATTTTGGCACCCAAT 1198
Query 1105 CGGCTGCTAAGGAGTGGATGAAACATTTCGTTAATGTACTCTGTGTGAATGCATGGCAGG 1164
|||||||||| |||||||||||||||| |||| ||||||| ||||||||||| |||||||
Sbjct 1199 CGGCTGCTAACGAGTGGATGAAACATTACGTTGATGTACTTTGTGTGAATGCTTGGCAGG 1258
Query 1165 TGAAAAGATATATAGATGTTTATTCTAATTCATCTGTTGTTGGTTTCTCTTCCGATGATA 1224
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 1259 TGAAAAGATATATAGATGTGTATTCTAATTCATCGGTTGTTGGTTTCTCTTCCGATGATA 1318
Query 1225 TGTCGAGGATATCAGATCTCTATTCTGCAGCAGAACAGAATTGGTCTAATTCTGTCAAAC 1284
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1319 TGTCAAGGATATCAGATCTCTATTCTGCAGCAGAACAGAATTGGTCCAATTCTGTCAAAC 1378
Query 1285 ACATATTGATGGATAAAAATGGAGATGAGGGTAGTACAGATATATCTGCCCTCCTTAAAG 1344
||||||||||||||| |||||||||||| || |||||||||||||||||||| |||||||
Sbjct 1379 ACATATTGATGGATAGAAATGGAGATGACGGCAGTACAGATATATCTGCCCTTCTTAAAG 1438
Query 1345 AGCAAATTGCAGCATATTTGAATTTCTTCTCAAGCGTTGTTGAACTTGCCCGGTCTAAGT 1404
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 AGCAAATTGCTGAATATTTGAATTTCTTCTCAAGCGTTGTTGAACTTGCCCGGTCTAAGT 1498
Query 1405 GGACAGAGTTCAATCTGAATCTAATGATTACTGGGTTTGGGATATTGGTTATATCACTCA 1464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 GGACAGAGTTCAATCTGAATCTAATGATTACTGGGTTTGGGATATTGGTTATATCACTCA 1558
Query 1465 TCCTTCAGTTTCTTGCTGTTTTCCATGGCGACAAATCTTATGCAGTGGGTTCTTGGTTAT 1524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 TCCTTCAGTTTCTTGCTGTTTTCCATGGCGACAAATCTTATGCAGTGGGTTCTTGGTTAT 1618
Query 1525 CCACTGGTGCAGCTTTCTCTCTCTTTATAGTAATGATTCGTGCTTGCAGCTTTCTTTCAA 1584
||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1619 CCACTGGTGCAGCTTTCACTCTCTTTATAGTAACGATTCGAGCTTGCAGCTTTCTTTCAA 1678
Query 1585 ACAGCTATATTTTGGAAGAAGGGAAAGTTGCAAACTTTCTTCTGGCAACAACTGGACTTA 1644
| |||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1679 ATAGCTATATCTTGGAAGAAGGAAAAGTTGCAAACTTTCTCCTGGCAACAACTGGACTTA 1738
Query 1645 TCAAGCTGCGGTACTCTGTTATGAGAAAAACAATGCGGAAAGAAGCTTTTATATTTCTGG 1704
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1739 TCAAGCTGCGGTACTCTGTTATGAGAAAAACAATGCGGAAAGAAGCTTTTATGTTTCTTG 1798
Query 1705 CTATGGTTTCTGTTCTCAGAGTTTCTATAGATATTGGGCTAACAAAGCAAGCTGCAACTT 1764
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 CTATGGTTTTTGTTCTCAGAGTTTCTATAGATATTGGGCTAACAAAGCAAGCTGCAACTT 1858
Query 1765 CTCAGTTTATGAGTAGCTCACCATCGTGGATGCTCGGGATAGCTCCAGACCATCCAGCAT 1824
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1859 CTCAGTTTATGAGTAGCTCACCATCGTGGATGCTAGGGATAGCTCCAGACCATCCAGCAT 1918
Query 1825 TGACATATGCGGTTGAAATTGCACCAATTCTGTCAGTGGTTATACTGATTTGTGTGCTCT 1884
||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1919 TGACATATGCGATTGAAATTGCACCAATTCTGTCAGTGGTTATACTCATTTGCGTGCTCT 1978
Query 1885 ACATAGCAATTTCGAAAGCACCCAGTGAGGGGCTGTGGAAGTATGTTACTATTGGTAGTA 1944
|| |||| ||| |||||||||||| ||||||| ||||||||||||||||| |||||||||
Sbjct 1979 ACGTAGCCATTGCGAAAGCACCCAATGAGGGGGTGTGGAAGTATGTTACTGTTGGTAGTA 2038
Query 1945 TG--G--T-AA-TGACTGGAGGAAGAAACCGCATCCCTCAAACGGTTTATGTAATCGGAT 1998
|| | | || |||| ||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 2039 TGTTGCTTCAAGTGACGGGAGGAAGAAACCGCATTCCTCAAACGGTTTATGTAATTGGAT 2098
Query 1999 TGGTGCAGCTCTGCCTTTTAGCTTCCGCACGCATGTTTTGCGCAGGAAAAGACAAGAATT 2058
||||||||||||||||||||||||| ||||| ||||||||| ||| ||||||||||||||
Sbjct 2099 TGGTGCAGCTCTGCCTTTTAGCTTCTGCACGTATGTTTTGCACAGAAAAAGACAAGAATT 2158
Query 2059 GGGCCATCAGAACTGTCGCTCTTGTATCTGCTTGTAGTTCGCCAGTAGTTCTATTGTCGG 2118
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 2159 GGGCCATCAGAACTGTCGCTCTTGTATCTGCTTGTAGTTCGCCAATAATTCTATTGTCGG 2218
Query 2119 GGAAGCAAGGATCAATGCTTGCATTAGCATATTTAGTTGCTGGCTATTGTATAATGAGGC 2178
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 2219 GGAAGCAAGGATCAATGCTTGCATTAGTATATTTAGTGGCTGGCTATTGTATAATGAGGC 2278
Query 2179 TGGAGGGTGTAGAGAGAAGAACCAAATCAGATGGACAGAGCAAATTCTCAAAACTAAATC 2238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2279 TGGAGGGTGTAGAGAGAAGAACCAAATCAGATGGACAGAGCAAATTCTCAAAACTAAATC 2338
Query 2239 CTCTCTGTGTGGTGCAATGGAGTCTTCTTTCTATATGCATGTTCTTCGCCAGCGGGCATT 2298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2339 CTCTCTGTGTGGTGCAATGGAGTCTTCTTTCTATATGCATGTTCTTCGCCAGCGGGCATT 2398
Query 2299 GGTGCGCCTTTGATGGCCTCCGTTATGGAGCTGCATTTGTTGGGTTTGATGAGTTTGTGC 2358
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 2399 GGTGCGCCTTTGATGGCCTTCGTTATGGAGCTGCATTTGTGGGGTTTGATGAGTTTGTGC 2458
Query 2359 TTATACGACAAGCCATCCTTTTGACAATCGAAACATTTGGATTCTCGATTATCCTCTCTG 2418
|||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||
Sbjct 2459 TTATACGACAAGCCATTCTTTTGACAATCGAGACATTTGGATTCTCGATCATCCTTTCTG 2518
Query 2419 TATTTGGACTTCCTCTCCTCGTACCTATTCACTCTCAAACTCCTCAGGCTCATGGAGAGA 2478
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||| || |
Sbjct 2519 TATTTGGACTTCCTCTCCTCATACCTTTTCACTCTCAAACTCCTCAGGCTCATGGCGAAA 2578
Query 2479 AGCGCCACCAGTTGTTTCAAATATATATGCTCTTTGGAGTTATATCTGCGACTACAGTCA 2538
|||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||
Sbjct 2579 AGCGCCACCAGTTGTTTCAAATGTATATGCTCTTTGGAGTTATATCTGCAACCACAGTCA 2638
Query 2539 CAGCTACAATTCTCTGCGTCACCATCCAGAGAAGACATCTGATGGTTTGGGGTTTGTTTG 2598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2639 CAGCTACAATTCTCTGCGTCACCATCCAGAGAAGACATCTGATGGTTTGGGGTTTGTTTG 2698
Query 2599 CTCCAAAGTTTGTCTTTGACGTTGTTGGTCTCATCCTCACTGATCTCCTCATCTGTTTGG 2658
|||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 2699 CTCCAAAGTTCGTCTTTGACGTTGTTGATCTCATCCTTACTGATCTCCTCATCTGTTTGG 2758
Query 2659 CTTCAGCTTACTATCTTTAATTAATACTTGCAATTGATGA 2698
|||||||||||||||||| ||| |||||||||||||||||
Sbjct 2759 CTTCAGCTTACTATCTTTGATTCATACTTGCAATTGATGA 2798
Score = 285 bits (154), Expect = 2e-75
Identities = 179/191 (94%), Gaps = 2/191 (1%)
Strand=Plus/Plus
Query 21 ATGGAGACGTATCTGAAGAATAAGAAGTTGATAGCTTTAGGCTTTCTCTTGATTCACGCC 80
|||||||| ||||||||||| |||||||||| ||||||||| ||||||||||||||||||
Sbjct 1 ATGGAGACATATCTGAAGAACAAGAAGTTGACAGCTTTAGGATTTCTCTTGATTCACGCC 60
Query 81 ATCGCCATTTTGATCTTCACGCGTGGGTTTCTTCTCACTCGAACAGAGCTTCCTTTTCAC 140
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 61 ATCGCCATTTTGATCTTCACGCGTGGGTTTCTTCTCACGCGAACAGAGCTTCCTTTCCAC 120
Query 141 AGTACTTGCTCCGACGTTTCTCTCTCTCCTTGCCTTGCTTCACAACA-TCCAAATCACGA 199
||||||||||||||||||||||||||||||||||||||||| | || ||||| ||||||
Sbjct 121 AGTACTTGCTCCGACGTTTCTCTCTCTCCTTGCCTTGCTTCTCCACGCTCCAA-TCACGA 179
Query 200 TTCGAGCTCGG 210
||| |||||||
Sbjct 180 TTCAAGCTCGG 190
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 133995904753
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5