BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941236
Length=1054
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17290.1 | Symbols: ATG5, APG5, ATATG5 | autophagy protein A... 1652 0.0
> AT5G17290.1 | Symbols: ATG5, APG5, ATATG5 | autophagy protein
Apg5 family | chr5:5686945-5689900 REVERSE LENGTH=1308
Length=1308
Score = 1652 bits (894), Expect = 0.0
Identities = 1002/1055 (95%), Gaps = 4/1055 (0%)
Strand=Plus/Plus
Query 1 AAGGTGTGACGAGGAAGAGAATGGCGAAGGAAGCGGTCAAGTATGTATGGGAAGGAGCAA 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AAGGTGTGACGGGGAAGAGAATGGCGAAGGAAGCGGTCAAGTATGTATGGGAAGGAGCAA 119
Query 61 TACCTCTGCAGATAT-ATCTCCACAAATCCGACGTTGCTTCTCACCCTGCTCCTCCTCCT 119
| ||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 120 TTCCTCTGCAGAT-TCATCTCCACAAATCCGACGTCGCTTCTCACCCTGCTCCTCCTCCT 178
Query 120 ACTCTTGTATTAGCACCAAGAATAGGATATTTGCCTCTGTTGATTCCTCTTATAAAGCCT 179
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GCTCTTGTGTTAGCACCAAGAATAGGATATTTGCCTCTGTTGATTCCTCTTATAAAGCCT 238
Query 180 TACTTCAAGGATTCACTTCCTCCTGGTGAAGATTCAATCTGGTTCGATTACAAAGGATTT 239
|| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 239 TATTTCAAGGATTCACTTCCTCCTGGTGAAGATTCAATTTGGTTTGATTACAAAGGATTT 298
Query 240 CCTTTGAAATGGTATATACCAACTGGTGTTCTTTTCGATCTCCTTTGCGCAGAACCAGAA 299
||| | ||||||||||||||||| ||||||||||||||||||||||| |||||||| |||
Sbjct 299 CCTCTAAAATGGTATATACCAACAGGTGTTCTTTTCGATCTCCTTTGTGCAGAACCCGAA 358
Query 300 AGACCTTGGAATCTGACGATACACTTTAGAGGATATCCTAGCAACATTCTGATACCATGT 359
||||| |||||||| |||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 359 AGACCATGGAATCTCACGATACACTTTAGAGGATATCCTTGCAACATACTGATACCATGT 418
Query 360 GAAGGGGAAGATTCCGTAAAATGGAACTTTGTTAATTCTTTGAAAGAGGCACAATATATC 419
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GAAGGAGAAGATTCTGTAAAATGGAACTTTGTTAATTCTTTGAAAGAGGCACAATATATC 478
Query 420 ATCAATGGAAATTGCAAGAATGTTATGAATATGTCTCAGAGTGATCAAGAGGATCTATGG 479
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 479 ATCAATGGAAATTGCAAGAATGTTATGAACATGTCTCAGAGTGATCAAGAGGATCTATGG 538
Query 480 ACTTCTGTCATGAACGGTGATCTTGATGCATATACTAGATTATCACCCAAGCTTAAAATG 539
|| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 539 ACCTCTGTCATGAACGGTGATCTTGATGCCTATACAAGATTATCACCCAAGCTTAAAATG 598
Query 540 GGAACAGTTGAAGATGAGTTTTCAAGGACAACAAGTTTGTCATCTCCACAATGTGGACAA 599
|||||||| ||||||||||||||||||| ||||||||||||||||||||||| | ||||
Sbjct 599 GGAACAGTCGAAGATGAGTTTTCAAGGAAAACAAGTTTGTCATCTCCACAATCTCAACAA 658
Query 600 GTTGTGGCTGAGACAGATGTGGCTGGTCAAGTTAAGACAGCAAGAATTCCTGTTCGGCTG 659
|||||| ||||||| || |||||||| |||||||||||||||||||||||||||||| ||
Sbjct 659 GTTGTGCCTGAGACGGAGGTGGCTGGACAAGTTAAGACAGCAAGAATTCCTGTTCGGTTG 718
Query 660 TATGTTCGAAGTATAAATAAAGATTTTGAGAATCTTGAAGATGTACCGGAGATCGATACC 719
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 719 TATGTTCGAAGTCTAAATAAAGATTTCGAGAATCTTGAAGATGTACCGGAGATCGATACC 778
Query 720 TGGGATGACATCTCGTACCTAAATCGCCCTGTTGAGTTCCTCAGAGAAGAAGGGAAATGC 779
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 779 TGGGATGACATCTCGTACCTTAATCGCCCTGTTGAGTTCCTCAAAGAAGAAGGGAAATGC 838
Query 780 TTTACCTTACGTGACGCCATTGAAAGTCTCCTCCCTGAGTTCATGGGAGACAGAGCGCAA 839
||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 839 TTTACGTTACGTGACGCCATTAAAAGTCTCCTCCCTGAGTTTATGGGAGACAGAGCGCAA 898
Query 840 ACGAGTGGAGAAGAAAGAAGCATGGATGATACAGAAGAAGAAGATGGTTCGAGGGAGACG 899
|||||||| |||||||||||||| |||||||||||||||| |||||| |||||||||| |
Sbjct 899 ACGAGTGGTGAAGAAAGAAGCATAGATGATACAGAAGAAGCAGATGGGTCGAGGGAGATG 958
Query 900 GGTGAAATCAAATTGGTAAGGATCCAAGGGATAGAAATGAAGCTAGAGATACCGTTTTCG 959
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 959 GGTGAAATCAAATTGGTAAGGATACAAGGGATAGAAATGAAGCTAGAGATACCGTTTTCG 1018
Query 960 TGGGTGGTAAATAACTTGATGAACCCAGAATTCTATCTCCATATCTGTGTTCTTGTGAAA 1019
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1019 TGGGTGGTAAATAACTTGATGAACCCAGAATTCTATCTCCATATCTCTGTCCTTGTGAAA 1078
Query 1020 GCTCCACAAAGGTGAAGT--AAGGTTCTCTGCAGT 1052
||||| |||||||||||| |||||||||||||||
Sbjct 1079 GCTCCTCAAAGGTGAAGTGTAAGGTTCTCTGCAGT 1113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51690937263
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5