BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941238
Length=1453
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17310.2 | Symbols: UGP2 | UDP-glucose pyrophosphorylase 2 |... 2344 0.0
AT3G03250.1 | Symbols: UGP, UGP1, AtUGP1 | UDP-GLUCOSE PYROPHOS... 1679 0.0
> AT5G17310.2 | Symbols: UGP2 | UDP-glucose pyrophosphorylase 2
| chr5:5696645-5700922 REVERSE LENGTH=1800
Length=1800
Score = 2344 bits (1269), Expect = 0.0
Identities = 1397/1459 (96%), Gaps = 7/1459 (0%)
Strand=Plus/Plus
Query 1 TTTCTCATCGGA---AAATCATCCAT-G--GCCGCCGCAACGGAGAAGCTCCCTCAGCTC 54
|||||| ||||| ||||||||||| | ||| ||||||| ||||||||||||||||||
Sbjct 55 TTTCTC-TCGGATTGAAATCATCCATGGCTGCCACCGCAACCGAGAAGCTCCCTCAGCTC 113
Query 55 AAATCCGCCGTCGATGGACTTACTGAGATGAGTGAGAATGAGAAGAGCGGATTCATCAGC 114
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
Sbjct 114 AAATCCGCCGTCGATGGACTTACTGAGATGAGCGAGAATGAGAAGAGTGGATTCATCAAC 173
Query 115 CTCGTTTCACGTTACCTCAGTGGTGAGGCCCAACACATTGAATGGAGTAAGATCCAGACA 174
|||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 174 CTCGTTTCACGTTACCTCAGTGGTGAAGCCCAGCACATTGAATGGAGCAAGATCCAGACA 233
Query 175 CCTACTGATGAAATTGTTGTTCCTTACGATAAAATGGCTAACGTCTCTCAAGATGCCACC 234
|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||
Sbjct 234 CCTACTGATGAAATTGTTGTTCCTTATGATAAAATGGCTAACGTCTCTGAAGATGCTTCC 293
Query 235 GAGACCAAATATCTGTTGGACAAGCTTGTTGTGCTAAAGCTTAATGGAGGTTTGGGAACG 294
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 294 GAGACCAAATATCTGTTGGACAAGCTTGTTGTGCTGAAGCTTAATGGAGGTTTGGGAACC 353
Query 295 ACAATGGGATGCACCGGTCCTAAATCGGTTATCGAAGTTCGTGATGGTTTGACATTTCTT 354
|||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 354 ACAATGGGATGCACTGGTCCAAAATCGGTTATTGAAGTTCGTGATGGTTTGACATTTCTT 413
Query 355 GACCTGATTGTTATCCAGATTGAGAATCTCAACAACAAGTATGGCTGCAAGGTTCCCTTG 414
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 414 GACCTGATTGTTATCCAGATTGAGAATCTCAACAACAAGTATAACTGCAAGGTTCCTTTG 473
Query 415 GTTCTTATGAACTCATTCAATACACATGATGACACACAAAAGATTGTGGAAAAATACACC 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 GTTCTTATGAACTCATTCAATACACATGATGACACACAAAAGATTGTGGAAAAATACACC 533
Query 475 AAGTCAAATGTTGATATTCACACTTTTAATCAGAGCAAGTATCCTCGTGTTGTTGCTGAT 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 AAGTCAAATGTTGATATTCACACTTTTAATCAGAGCAAGTATCCTCGTGTTGTTGCTGAT 593
Query 535 GAGTTTGTGCCGTGGCCAAGCAAAGGAAAGACTGACAAGGATGGATGGTATCCTCCCGGT 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 GAGTTTGTGCCGTGGCCAAGCAAAGGAAAGACTGACAAGGATGGATGGTATCCTCCCGGT 653
Query 595 CACGGTGATGTATTCCCATCCCTCATGAACAGTGGAAAGCTCGATGCTTTCTTATCACAG 654
|||||||||||||||||||| |||||||||||||| ||||| ||||| ||||||||||||
Sbjct 654 CACGGTGATGTATTCCCATCTCTCATGAACAGTGGCAAGCTTGATGCGTTCTTATCACAG 713
Query 655 AGTAAGGAGTATGTGTTCATCGCCAACTCAGACAACTTGGGCGCTATTGTTGACTTAAAA 714
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 714 GGTAAGGAGTATGTGTTCATCGCCAACTCAGACAACTTGGGCGCAATCGTTGACTTAAAA 773
Query 715 ATCTTGAAGCACCTGATCCAGAACAAAAATGAGTATTGTATGGAGGTTACACCCAAAACA 774
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 774 ATCTTGAAGCACCTGATCCAGAACAAAAATGAGTACTGTATGGAGGTTACACCCAAAACA 833
Query 775 CTAGCTGATGTAAAGGGAGGAACTCTCATCTCTTACGAAGGAAGAGTACAGCTTTTGGAG 834
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 834 CTAGCTGATGTAAAGGGAGGAACTCTCATTTCTTACGAAGGAAAAGTACAGCTTTTGGAG 893
Query 835 ATTGCTCAGGTTCCTGATGAACATGTCAATGAATTCAAATCAATTGAGAAATTCAAGATT 894
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 894 ATTGCTCAGGTTCCTGATGAACATGTAAATGAATTCAAATCAATTGAGAAATTCAAGATT 953
Query 895 TTCAACACAAACAACCTTTGGGTTAACTTGAAAGCTATCAAAAAGCTTGTGGAAGCTGAT 954
|||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 954 TTCAACACCAACAACCTATGGGTGAACTTGAAAGCCATCAAAAAGCTTGTGGAAGCTGAT 1013
Query 955 GCACTTAAAATGGAGATCATCCCAAACCCGAAGGAAGTTGATGGAGTCAAAGTTCTTCAA 1014
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1014 GCACTTAAAATGGAGATCATCCCAAACCCGAAGGAAGTTGACGGAGTCAAAGTTCTTCAG 1073
Query 1015 CTGGAAACTGCAGCTGGTGCTGCTATAAGGTTTTTTGATAACGCAATCGGTGTGAATGTA 1074
||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 1074 CTGGAAACTGCAGCTGGTGCTGCGATAAGGTTTTTTGATAATGCAATTGGTGTGAATGTA 1133
Query 1075 CCTCGGTCACGATTCTTGCCAGTGAAGGCAACTTCAGACTTGCTTCTTGTTCAATCGGAT 1134
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 CCTCGGTCACGGTTCTTGCCAGTGAAGGCAACTTCAGACTTGCTTCTTGTTCAATCGGAT 1193
Query 1135 CTGTATACACTCGTCGATGGCTTTGTCATAAGAAACAAAGCTAGAACAAACCCCACAAAC 1194
||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1194 CTGTACACACTCGTAGATGGCTTTGTCACAAGAAACAAAGCTAGAACAAACCCCACAAAC 1253
Query 1195 CCAGCGATCGAATTGGGACCCGAATTCAAAAAGGTAGCGAGCTTCCTTAGCCGGTTTAAG 1254
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1254 CCAGCGATCGAGTTGGGACCCGAATTCAAAAAGGTAGCGAGTTTCCTTAGCCGGTTCAAG 1313
Query 1255 TCCATCCCGAGTATAGTTGAGCTCGATAGCCTTAAGGTCTCTGGTGATGTCTGGTTTGGC 1314
||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||
Sbjct 1314 TCCATCCCGAGTATAGTTGAGCTCGATAGTCTTAAGGTCTCAGGTGATGTTTGGTTTGGC 1373
Query 1315 TCAGGCGTTGTTCTCAAGGGCAAAGTGTCAGTAAAGGCAAACTCCGGGACTAAACTTGAA 1374
|| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1374 TCCGGCGTTGTTCTCAAGGGCAAAGTGACAGTAAAGGCAAACGCCGGGACTAAACTTGAA 1433
Query 1375 ATCCCTGACAATGCCGTGCTCGAGAATAAGGATATCAACGGTCCAGAGGATCTGTaaaaa 1434
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 1434 ATCCCTGACAATGCCGTGCTCGAGAATAAGGACATCAACGGTCCAGAGGATCTGTGAAAA 1493
Query 1435 aaCTTAAAAGACTTACTTT 1453
|||||||||||||||||||
Sbjct 1494 AACTTAAAAGACTTACTTT 1512
> AT3G03250.1 | Symbols: UGP, UGP1, AtUGP1 | UDP-GLUCOSE PYROPHOSPHORYLASE
1 | chr3:749390-754159 REVERSE LENGTH=1926
Length=1926
Score = 1679 bits (909), Expect = 0.0
Identities = 1265/1437 (88%), Gaps = 23/1437 (2%)
Strand=Plus/Plus
Query 13 AAATCATCCATGGCCGCCGCAACGGAGAAGCTCCCTCAGCTCAAATCCGCCGTCGATGGA 72
|||||| | ||||||||| | || ||||| |||||||| ||||||||||||||||||||
Sbjct 137 AAATCAACAATGGCCGCCACCACTGAGAATCTCCCTCAACTCAAATCCGCCGTCGATGGC 196
Query 73 CTTACTGAGATGAGTGAGAATGAGAAGAGCGGATTCATCAGCCTCGTTTCACGTTACCTC 132
||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 197 CTTACTGAGATGAGTGAGAGTGAGAAGAGCGGATTCATCAGCCTGGTTTCACGTTACCTG 256
Query 133 AGTGGTGAGGCCCAACACATTGAATGGAGTAAGATCCAGACACCTACTGATGAAATTGTT 192
|| |||||||| ||||||||||| ||||||||||||||||| ||||| |||||||| |||
Sbjct 257 AGCGGTGAGGCACAACACATTGAGTGGAGTAAGATCCAGACTCCTACCGATGAAATCGTT 316
Query 193 GTTCCTTACGATAAAATGGCTAAC-GTCTCTCAAGATGCCACCGAGACCAA-ATATCTGT 250
||||| ||||| |||||| | | ||||| ||||||| |||||||||| | ||||||
Sbjct 317 GTTCCCTACGAGAAAATGAC-CCCTGTCTCCCAAGATGTTGCCGAGACCAAGA-ATCTGT 374
Query 251 TGGACAAGCTTGTTGTGCTAAAGCTTAATGGAGGT-TTGGGAACGACAATGGGATGCACC 309
||||||| ||||||||| | ||||||||||||||| || ||||| ||||||||||||||
Sbjct 375 TGGACAAACTTGTTGTGTTGAAGCTTAATGGAGGTCTT-GGAACAACAATGGGATGCACT 433
Query 310 GGTCCTAAATCGGTTATCGAAGTTCGTGATGGTTTGACATTTCTTGACCTGATTGTTATC 369
|| || || || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 434 GGCCCGAAGTCCGTTATCGAAGTTCGTGATGGTTTGACATTTCTTGATCTGATTGTTATC 493
Query 370 CAGATTGAGAATCTCAACAACAAGTATGGCTGCAAGGTTCCCTTGGTTCTTATGAACTCA 429
||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 494 CAGATTGAGAATCTCAACAACAAGTATGGCTGCAAGGTTCCGTTAGTTCTCATGAACTCG 553
Query 430 TTCAATACACATGATGACACACAAAAGATTGTGGAAAAATACACCAAGTCAAATGTTGAT 489
|| |||||||||||||||||||| |||||||||||||| |||||||| |||||||||||
Sbjct 554 TTTAATACACATGATGACACACATAAGATTGTGGAAAAGTACACCAACTCAAATGTTGAC 613
Query 490 ATTCACACTTTTAATCAGAGCAAGTATCCTCGTGTTGTTGCTGATGAGTTTGTGCCGTGG 549
|||||||||||||| |||||||| ||||| |||||||| || |||||||||||||| |||
Sbjct 614 ATTCACACTTTTAACCAGAGCAAATATCCCCGTGTTGTGGCAGATGAGTTTGTGCCATGG 673
Query 550 CCAAGCAAAGGAAAGACTGACAAGGATGGATGGTATCCTCCCGGTCACGGTGATGTATTC 609
|| ||||| |||||||| |||||||| || ||||||||||||||||| ||||||||||||
Sbjct 674 CCCAGCAAGGGAAAGACCGACAAGGAGGGCTGGTATCCTCCCGGTCATGGTGATGTATTC 733
Query 610 CCATCCCTCATGAACAGTGGAAAGCTCGATGCTTTCTTATCACAGAGTAAGGAGTATGTG 669
||| |||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||
Sbjct 734 CCAGCCCTCATGAACAGTGGAAAGCTCGATACTTTCTTATCACAGGGTAAGGAATATGTG 793
Query 670 TTCATCGCCAACTCAGACAACTTGGGCGCTATTGTTGACTTAAAAATCTTGAAGCACCTG 729
|| | ||||| |||||||||||||| || || |||||||||| |||| ||||||| ||
Sbjct 794 TTTGTTGCCAATTCAGACAACTTGGGTGCCATCGTTGACTTAACAATCCTGAAGCATTTG 853
Query 730 ATCCAGAACAAAAATGAGTATTGTATGGAGGTTACACCCAAAACACT-AGCTGATGTAAA 788
||||||||||| || || || || |||||||||||||||||||| || ||||||||||||
Sbjct 854 ATCCAGAACAAGAACGAATACTGCATGGAGGTTACACCCAAAAC-CTTAGCTGATGTAAA 912
Query 789 GGGAGGAACTCTCATCTCTTACGAAGG-AAGAGTACAGCTTTTGGAGATTGCTCAGGTTC 847
||| ||||||||||| ||||| ||||| || ||| |||||| ||||||||||||||||||
Sbjct 913 GGGGGGAACTCTCATTTCTTATGAAGGCAA-AGTCCAGCTTCTGGAGATTGCTCAGGTTC 971
Query 848 CTGATGAACATGTCAATGAATTCAAATCAATTGAGAAATTCAAGATTTTCAACACAAACA 907
||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||
Sbjct 972 CTGATGAACATGTCAATGAGTTCAAATCAATTGAGAAGTTCAAGATATTCAACACAAACA 1031
Query 908 ACCTTTGGGTTAACTTGAAAGCTATCAAAAAGCTTGTGGAAGCTGATGCACTTAAAATGG 967
|||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1032 ACCTATGGGTTAACTTGAAGGCCATCAAAAAGCTTGTGGAAGCTGATGCACTTAAAATGG 1091
Query 968 AGATCATCCCAAACCCGAAGGAAGTTGATGGAGTCAAAGTTCTTCAACTGGAAACTGCAG 1027
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1092 AGATCATTCCAAACCCAAAGGAAGTTGATGGAGTCAAAGTTCTTCAACTGGAAACTGCAG 1151
Query 1028 CTGGTGCTGCTATAAGGTTTTTTGATAACGCAATCGGTGTGAATGTACCTCGGTCACGAT 1087
| |||||||| |||||||| ||||| ||||| |||||||| ||||||||||| ||||| |
Sbjct 1152 CCGGTGCTGCGATAAGGTTCTTTGACAACGCTATCGGTGTTAATGTACCTCGCTCACGGT 1211
Query 1088 TCTTGCCAGTGAAGGCAACTTCAGACTTGCTTCTTGTTCAATCGGATCTGTATACACTC- 1146
|||||||||||||||||| |||||||||||| || || || || ||||| || || ||
Sbjct 1212 TCTTGCCAGTGAAGGCAAGTTCAGACTTGCTGCTCGTCCAGTCTGATCTCTACAC-CTTA 1270
Query 1147 GTCGATGGCTTTGTCA-TAAGAAACAAAGCTAGAACAAACCCCACAAACCCAG-CGATCG 1204
|| ||||||||||||| | |||||||||||||||| |||||| | ||||| | | || |
Sbjct 1271 GTTGATGGCTTTGTCACTC-GAAACAAAGCTAGAACTAACCCCTCGAACCC-GTCAATTG 1328
Query 1205 AATTGGGACCCGAATTCAAAAAGGTAGCGAGCTTCCTT-AGCCGGTTTAAGTCCATCCCG 1263
||||||||||||| ||||| ||||| || | ||| ||| ||||||||||||||||| ||
Sbjct 1329 AATTGGGACCCGAGTTCAAGAAGGTGGCTA-CTTTCTTGAGCCGGTTTAAGTCCATTCCT 1387
Query 1264 AGTATAGTTGAGCTCGATAGCCTTAAGGTCTCTGGTGATGTCTGGTTTGGCTCAGGCGTT 1323
|||||||| |||||||| ||||||||||| ||||||||||||||||||||||| | ||
Sbjct 1388 AGTATAGTCGAGCTCGACAGCCTTAAGGTGTCTGGTGATGTCTGGTTTGGCTCTTCCATT 1447
Query 1324 GTTCTCAAGGGCAAAGTGTCAGTAAAGGCAAACTCCGG-GACTAAA-CTTGAAATCCCTG 1381
|||||||||||||| ||| | || |||||| ||||| | | || |||||||| || |
Sbjct 1448 GTTCTCAAGGGCAAGGTGACTGTGGCGGCAAAATCCGGTG--TGAAGCTTGAAATTCCGG 1505
Query 1382 ACAATGCCGTGCTCGAGAATAAGGATATCAACGGTCCAGAGGATCTGTaaa-aaaaC 1437
||| |||||| ||||||| ||| | ||||| |||||||| || || | || |||||
Sbjct 1506 ACAGGGCCGTGGTCGAGAACAAGAACATCAATGGTCCAGAAGACCTCTGAATAAAAC 1562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71636177715
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5