BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg941241

Length=523
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G17340.1 | Symbols:  | Putative membrane lipoprotein | chr5:...   797    0.0  


> AT5G17340.1 | Symbols:  | Putative membrane lipoprotein | chr5:5715624-5716268 
REVERSE LENGTH=645
Length=645

 Score =  797 bits (431),  Expect = 0.0
 Identities = 488/516 (95%), Gaps = 2/516 (0%)
 Strand=Plus/Plus

Query  9    AAAAATCCAAAAATGAAGAATCTCGCAATTCTTGTTGTTGCCATGATACTCTTCACAAGC  68
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  39   AAAAATCCAAAAATGAAGAATCTCGCAATTCTTGTTGTTGCCATGATACTCTTCTCAAGC  98

Query  69   TGTGTCACATCTCAAGTCACAGCAAAAAATGTAGATTCATTTCCATTACGTACTGAAGAG  128
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  99   TGTGTCACATCTCAAGTCACAGCAAAAAATGTGGATTCATTTCCATTACGTACTGAAGAG  158

Query  129  CTCGAATGGTGGCATTACCATCATTTCTACCCTCACTATCACCCTAAGCCACATTGGCCA  188
            |||||||||||||||||| ||| |||||||||||||| | ||||||||||||||||||||
Sbjct  159  CTCGAATGGTGGCATTACAATCCTTTCTACCCTCACTTTTACCCTAAGCCACATTGGCCA  218

Query  189  TTCCCCACCACCGGAAAGGCTCTCCCACCAATCCCGGCCGGCTTCCACCCTATCCCATTT  248
            ||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| 
Sbjct  219  TTCCCCACCACCGGAAAGGCTCTCCCACCAATCCCAGCCGGCTTCCACCCGATTCCATTC  278

Query  249  CATCCACCACCGGTTGTAACCAAATGCTTGGCCGATTGCAAGGATGTAAGAACATGTGTT  308
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct  279  CATCCACCACCGGTTGTAACCAAATGCTTGGCCGATTGCAAGGATGTAAAAACATGT-TT  337

Query  309  G-CGGATATCGCTATAGCTTTCTTCACGCGCAAACCCGCTATTGGATTGGATTGTTGTGC  367
            | |||||||||||| |||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct  338  GGCGGATATCGCTAAAGCTTTCTTCACCCGCAAACCAGCTATTGGATTGGATTGTTGCGC  397

Query  368  CTCTATCCAGAAGATGGATGAAGATTGTGACAAGACTGTTTTTGGAGCGTACCACAACCC  427
            ||| |||||||||||||||||||||||||| |||||||| |||||||| |||||||||||
Sbjct  398  CTCCATCCAGAAGATGGATGAAGATTGTGATAAGACTGTCTTTGGAGCCTACCACAACCC  457

Query  428  TTTCTTTGACTGTTTGGTTAAGCTTCATTGCTCTACCAAAGCTAAATCCACTCCTTCCGC  487
            ||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||
Sbjct  458  TTTCTTTGACTGTGTGGTTAAGCTTCATTGCTCTACCAAAGCTAAATCCACTCCGTCTGC  517

Query  488  TCCTTCGCCAGCTTAGGGTTTTTATTAGGAATTTAT  523
            |||  | ||||||||||||||| |||||||||||||
Sbjct  518  TCCCACTCCAGCTTAGGGTTTTAATTAGGAATTTAT  553



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25016605206


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5