BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg941243

Length=568
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G17360.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   797    0.0  


> AT5G17360.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: DNA LIGASE 6 (TAIR:AT1G66730.1); Has 1807 Blast hits 
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; 
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other 
Eukaryotes - 339 (source: NCBI BLink). | chr5:5720376-5721659 
FORWARD LENGTH=1284
Length=1284

 Score =  797 bits (431),  Expect = 0.0
 Identities = 510/549 (93%), Gaps = 2/549 (0%)
 Strand=Plus/Plus

Query  21   ATGGGTGATGAAAATCTTTCTGGCAAGCCTCTGGATGAGAAGGTTTCATTGGATTTGACT  80
            ||||||||| ||| | | |||   |||||||||||||||||||||||| |||||||||||
Sbjct  245  ATGGGTGATCAAAGTATATCTAATAAGCCTCTGGATGAGAAGGTTTCAATGGATTTGACT  304

Query  81   TGTGGTAAGGAGGAGATTTTGGAAGAGCTTAGGATTTGTTTGCCTAAATGGGTTACACAA  140
            |||||| |||||| ||||||||||||||||||||||||||| || |||||||||||||||
Sbjct  305  TGTGGTCAGGAGGCGATTTTGGAAGAGCTTAGGATTTGTTTACCCAAATGGGTTACACAA  364

Query  141  GAACAAGTAACAGATATGATTAGAGGGACATGTAGGAATATAGTCGAAATTGTTGATAAT  200
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  365  GAACAAGTCACAGATATGATTAGAGGGACATGTAGGAATATAGTCGAAATTGTTGATAAT  424

Query  201  TTTTATGAGCACGAGACTAAATTCTATGAGCAAGTCTCTGCTGTTATATCTTTCACTTCT  260
            ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  425  TTTTACGAGCACGAGACTAAATTCTATGAGCAAGTTTCTGCTGTTATATCTTTCACTTCT  484

Query  261  AGAGATGGGATTAATTCGTGCAACCACGAAGAACTTGTTTCGAAACTGGAGTTTATTCAC  320
            |||||||| |||| |||| | |||||||| | | ||||||||||||||||||||||||||
Sbjct  485  AGAGATGGAATTAGTTCGAGTAACCACGATGCATTTGTTTCGAAACTGGAGTTTATTCAC  544

Query  321  TGTGAAACCGAGCGGAGTGAAAGTTGTCAGCCATTGCAGTTTCCCAAGCTTAAGAGTATG  380
            |||||||| ||||||||||||||||||||||||| |||||||| |||||||||||| |||
Sbjct  545  TGTGAAACAGAGCGGAGTGAAAGTTGTCAGCCATCGCAGTTTCACAAGCTTAAGAGCATG  604

Query  381  AGTAGTTCTCAGAAGAGCAGCATTTCTCCTGTGAAGAGGAACAGAAAGATAAAAGGTAAA  440
            |||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct  605  AGTAGTTCACAGAAGAGCAGTATTTCTCCTGTGAAGAGGAACAGAAAGATTAAAGGTAAA  664

Query  441  CCAAAGAAGAAAGGAAAAGCTTGTTCTAAGGTTGAATCTGTAGGCCCAAAGCAAGCTTCA  500
            |||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||
Sbjct  665  CCAAAGAAGAAAGGAAAAGCTTCTTCTAAGGTAGAATCTGGAGGCCCAAAGCAAGCTTCA  724

Query  501  ATAACTAAATTCTTCAACAAAGTTCCTTCAGATGAAACCAAGGT-TTAGGAGGCTAAAGA  559
            |||||||||||||||||||||||| ||||||| | ||||||| | ||||||||||||| |
Sbjct  725  ATAACTAAATTCTTCAACAAAGTTTCTTCAGAAGGAACCAAG-TCTTAGGAGGCTAAATA  783

Query  560  AGTGTATTT  568
            || ||||||
Sbjct  784  AGCGTATTT  792



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27277141821


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5