BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941254
Length=970
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17460.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1279 0.0
> AT5G17460.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: response to salt stress.
| chr5:5757100-5758940 REVERSE LENGTH=1468
Length=1468
Score = 1279 bits (692), Expect = 0.0
Identities = 778/821 (95%), Gaps = 0/821 (0%)
Strand=Plus/Plus
Query 148 CAACTCGATCATATGCAAGTGGAAGAGGTAAAGACTACAATCTATTTGGTAATGCGAAAC 207
||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 261 CAACTCGATTTTATGCAAGTGGAAGAGGAAAAGACTACAATCTATTTGGTAATGTGAAAC 320
Query 208 CAGGTGATGATGACTTTAGAAAAGCCTGGGAGAAAGAAATGGGGGATGATGATACTCTAT 267
||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||
Sbjct 321 CAGGTGATGATGACTTTAGAAAAACATGGGAGAAAGAAATGGAGGATGATGATACTCTAT 380
Query 268 GGTCAGGAAGTGAAGACGAAGGCGATGATAATACAAAACAAGAAAGTGGAAGAAACCGCC 327
|||||||||||||||||||| || ||||||| |||||||||||||| ||||||||||| |
Sbjct 381 GGTCAGGAAGTGAAGACGAAAGCAATGATAAGACAAAACAAGAAAGCGGAAGAAACCGTC 440
Query 328 TTGAAAAAGAGATTAAGAAAGCTAGACAACAAGCTAAAGTTAGCTCCGATCAAATTGATG 387
||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||
Sbjct 441 TTGAAAAAGAGATTAAGAAAGCTAGACAACAAGCTAAGGATAGCACCGATCAAATTGATG 500
Query 388 CTGATGATAGTGATGAATTATACAGTGTTTGGTCAGGAAGTGATGAGGAAAAAACGTTGT 447
||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||
Sbjct 501 GAGATGATAGTGATGAATTGTACAGCGTTTGGTCAGGAAGTGATGAGGAAAAAACGCTGT 560
Query 448 GGACAGGCGATGAAGGTGATGATGACGACGATATTCCAACAGAGCCACGCCCGAACGAGG 507
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 GGACTGGCGATGAAGGTGATGATGACGACGATATTCCAACAGAGCCACGCCCGAACGAGG 620
Query 508 CATCTGATAAATACTTAGATAAGTTGTTTGAGTTTGAGGAGAAGCCAAAGTACAGGACAA 567
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 621 CATCTGATAAATACTTAGATAAGTTGTTTGAGTTTGAGGAGAAACCAAAGTACAGGACAA 680
Query 568 TCTCAGAGTTGTTGAAATCTGAGAATGAACCCGAGGAGCTTTCACCCGGTAAAAAGGCAA 627
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
Sbjct 681 TCTCAGAGTTGTTGAAATCTGAAAATGAACCTGAGGAGCTTTCACCCGGTAAAAAGGCGA 740
Query 628 GGAAGCTTGCTGTTGAGAACGCGCTGAAGAAACTAAACAAAGGGCCGGACGGGCGTTACA 687
||||||||||||||||||||||| |||||||||| || |||||||| || ||||| ||||
Sbjct 741 GGAAGCTTGCTGTTGAGAACGCGTTGAAGAAACTGAATAAAGGGCCTGATGGGCGCTACA 800
Query 688 CAAACGTGTGGGAAGTGATGAGTGATGTCGACATTCTGATTGGAGCGTTTGAAAACATTA 747
|||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 801 CAAACGTGTGGGAAGTAATGAGTGATGTTGACATTCTGATTGGAGCATTTGAAAACATTA 860
Query 748 TCTCAGGACCTGAATATGAAGAGCTAAGGAAAGGTGGACCCAAGAGACTTAACATGCAGT 807
|||| |||||||| |||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 861 TCTCGGGACCTGAGTATGAAGAGCTAAGAAAAGGTGGACCCAAGAGACTGAACATGCAGT 920
Query 808 TCTTCAAGGATATACAAACTCGCATGAGAGATCCAAACTTCAAATTCACACCTGAAATAA 867
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 921 TCTTCAAGGATATACAAACTCGAATGAGAGATCCAAACTTCAAGTTCACACCTGAAATAA 980
Query 868 AGTTGAAGCCAAAGAGTAAACTAGTGCCTAGGAAGAAATGGCAGAAGGCACAGTCCAGAA 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 AGTTGAAGCCAAAGAGTAAACTAGTGCCTAGGAAGAAATGGCAGAAGGCACAGTCCAGAA 1040
Query 928 TAAGGAAAGCAAAGAAGCGGTAAAAGCTCCATGCTTGTTCA 968
|||||||||| |||||||||||||||||||| ||| |||||
Sbjct 1041 TAAGGAAAGCGAAGAAGCGGTAAAAGCTCCACGCTAGTTCA 1081
Score = 195 bits (105), Expect = 9e-49
Identities = 135/149 (91%), Gaps = 3/149 (2%)
Strand=Plus/Plus
Query 1 AAGCCGTT-AAAGGGAAAAGGATGTTGGCGCGAAGACTCTACTCTCTGTTCTCAATCATA 59
|||||||| |||| |||||||||||| ||||||||||||| |||||| ||||| ||| ||
Sbjct 53 AAGCCGTTAAAAGAGAAAAGGATGTTCGCGCGAAGACTCTCCTCTCTATTCTCTATCGTA 112
Query 60 ACCAAAAGATCACAAAGTCGCTTGCTTTCGTGTCCAG-CAACAACTGCTCAAAATTGGGT 118
||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||
Sbjct 113 ACCAAAAGATCACAAAGTCGCTTGCTTTCGTGTCC-GACAACTTCTGCTCAAAATTGGGT 171
Query 119 ATTTGCTGGGTTTCGTCAGAATTTACAAG 147
|||||||| ||||||||||| | ||||||
Sbjct 172 ATTTGCTGAGTTTCGTCAGACTATACAAG 200
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47471268915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5