BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941256
Length=483
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17470.1 | Symbols: | EF hand calcium-binding protein famil... 582 8e-166
AT2G36180.1 | Symbols: | EF hand calcium-binding protein famil... 416 9e-116
> AT5G17470.1 | Symbols: | EF hand calcium-binding protein family
| chr5:5760966-5761406 REVERSE LENGTH=441
Length=441
Score = 582 bits (315), Expect = 8e-166
Identities = 401/443 (91%), Gaps = 4/443 (1%)
Strand=Plus/Plus
Query 21 ATGTCTATCGCAGAAATCTTCGAGAGAGTTGACAAAAACAAAGATGGAAAAATCTCATGG 80
|||||| | ||||| |||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 1 ATGTCTGTTGCAGAGATCTTCGAGAGAGTCGACAAAAACAAAGATGGGAAAATCTCATGG 60
Query 81 GATGAATTTGCCGAAGCGATTCGCGCTTTTTCTCCTTTAATAACATCTGAAGAACTTGAT 140
|| |||||||| |||||||||||||| |||||||||| |||||||||||||||| | |||
Sbjct 61 GACGAATTTGCTGAAGCGATTCGCGCCTTTTCTCCTTCAATAACATCTGAAGAAATCGAT 120
Query 141 CAGATGTTCAGAGAGCTTGACGTCGACGGTGATAACCAAATCGATGCTGCGGAATTTGCT 200
| |||||||||||| |||| ||||||||||||||||||||||| | |||||||| ||||
Sbjct 121 AACATGTTCAGAGAGATTGATGTCGACGGTGATAACCAAATCGACGTTGCGGAATATGCT 180
Query 201 TCGTGCTTGATGCTTGGCGGTGAAGGAGGA-AAAGACGATGAAGACACTGTTATGAAAGA 259
|| |||||||||||||| ||||||||| | ||||| || ||||||| ||||||||||||
Sbjct 181 TCTTGCTTGATGCTTGGTGGTGAAGGA-AATAAAGAGGACGAAGACATTGTTATGAAAGA 239
Query 260 AGCTTTTGATTTGTATGATATTGATGGTGACGGAAAGATATCCGCGAGTGAGATTCATGT 319
|||||||||||||||||| ||||||||||| ||||| ||||| |||||||||||||||||
Sbjct 240 AGCTTTTGATTTGTATGACATTGATGGTGATGGAAAAATATCGGCGAGTGAGATTCATGT 299
Query 320 GGTATTGAAACGTCTTGGAGAGAAGCATACAAT-GCAAGAATGCGTTGTGATGGTTCGAG 378
||||||||||||||||||||| || || ||||| || ||||||| ||| |||||||||||
Sbjct 300 GGTATTGAAACGTCTTGGAGAAAAACAAACAATAGC-AGAATGCATTGCGATGGTTCGAG 358
Query 379 CCGTTGATGCAGATGGTGATGGCTTTGTGAGTTTTGAAGAGTTTAAGATTATGATGAGTT 438
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 359 CCGTTGATGCAGATGGTGATGGCTTTGTGAGTTTTGAAGAGTTTAAGACTATGATGAGTT 418
Query 439 CTAACAACATAAAATCACTATGA 461
|||||||| ||||| || ||||
Sbjct 419 GTAACAACAAAAAATTACAATGA 441
> AT2G36180.1 | Symbols: | EF hand calcium-binding protein family
| chr2:15173782-15174216 REVERSE LENGTH=435
Length=435
Score = 416 bits (225), Expect = 9e-116
Identities = 356/420 (85%), Gaps = 5/420 (1%)
Strand=Plus/Plus
Query 30 GCAGAAATCTTCGAGAGAGTTGACAAAAACAAAGATGGAAAAATCTCATGGGATGAATTT 89
||||| || ||||| || |||||||||||||||||||||||||| | |||||| |||||
Sbjct 4 GCAGAGATTTTCGAAAGTGTTGACAAAAACAAAGATGGAAAAATTTTATGGGACGAATTC 63
Query 90 GCCGAAGCGATTCGCGCTTTTTCTCCTTTAATAACATCTGAAGAACTTGATCAGATGTTC 149
|| || |||||||||| |||||||||| ||||||||| |||||| ||||| |||||||
Sbjct 64 GCAGAGGCGATTCGCGTTTTTTCTCCTCAAATAACATCAGAAGAAATTGATAAGATGTTT 123
Query 150 AGAGAGCTTGACGTCGACGGTGATAACCAAATCGATGCTGCGGAATTTGCTTCGTGCTTG 209
| || ||||| ||||| |||||| ||||| |||| || ||| ||||||||||| |||
Sbjct 124 ATAGTTCTTGATGTCGATGGTGATGGTCAAATTGATGATGTGGAGTTTGCTTCGTGTTTG 183
Query 210 ATGCTTGGCGGTGAAGGAGGAAAAG--A-CGATGAAGACA-CTGTTATGAAAGAAGCTTT 265
||| | |||| ||||| ||||| | ||| ||||| | ||||||||||||||||||
Sbjct 184 ATGGTCAATGGTGGAGGAGAAAAAGATACCGAAGAAGA-AGTTGTTATGAAAGAAGCTTT 242
Query 266 TGATTTGTATGATATTGATGGTGACGGAAAGATATCCGCGAGTGAGATTCATGTGGTATT 325
|||||||||||||| |||||||| |||||||| || |||||||||||||||||||||||
Sbjct 243 CGATTTGTATGATATGGATGGTGATGGAAAGATCTCAGCGAGTGAGATTCATGTGGTATT 302
Query 326 GAAACGTCTTGGAGAGAAGCATACAATGCAAGAATGCGTTGTGATGGTTCGAGCCGTTGA 385
|||||| ||||||||||||||||||||| |||| || ||||||||||||| | |||||||
Sbjct 303 GAAACGACTTGGAGAGAAGCATACAATGGAAGATTGTGTTGTGATGGTTCAAACCGTTGA 362
Query 386 TGCAGATGGTGATGGCTTTGTGAGTTTTGAAGAGTTTAAGATTATGATGAGTTCTAACAA 445
| ||| ||||||| ||||| | |||||||||||||||||||||||||| ||||||||
Sbjct 363 TAAAGACAGTGATGGTTTTGTTAATTTTGAAGAGTTTAAGATTATGATGAACTCTAACAA 422
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23007239326
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5