BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941257
Length=295
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17480.1 | Symbols: APC1, PC1 | pollen calcium-binding prote... 411 2e-114
> AT5G17480.1 | Symbols: APC1, PC1 | pollen calcium-binding protein
1 | chr5:5762689-5762940 FORWARD LENGTH=252
Length=252
Score = 411 bits (222), Expect = 2e-114
Identities = 243/253 (96%), Gaps = 2/253 (1%)
Strand=Plus/Plus
Query 22 ATGGCTGATGCGACGGAGAAAGCCGAGCACGACCGTATATTCAAGAAATTTGATGCTAAC 81
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 ATGGCTGATGCAACGGAGAAAGCCGAGCACGACCGTATTTTCAAGAAATTTGATGCTAAT 60
Query 82 GGCGATGGAAAAATATCAGCAGCCGAACTCGAAGAAGCTCTTAAGACACTTGGCTCGGTA 141
|| || |||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 GGTGACGGAAAAATTTCAGCAGCCGAACTCGAAGAAGCTCTTAAGACACTTGGTTCGGTA 120
Query 142 AC-GCCTGATGACGTCAAGCGTATGATGGCTGAAATTGATACTGATGGTGATGGAAACAT 200
|| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACAG-CTGATGACGTCAAACGTATGATGGCTGAAATTGATACTGATGGTGATGGAAACAT 179
Query 201 ATCGTATCAAGAATTCACTGATTTTGCAGGTGCCAATCGTGGACTTATGAAGGATGTTGC 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ATCGTATCAAGAATTCACTGATTTTGCAGGTGCCAATCGTGGACTTATGAAGGATGTTGC 239
Query 261 CAAAATTTTCTAA 273
|||||||||||||
Sbjct 240 CAAAATTTTCTAA 252
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13622559979
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5