BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941263
Length=1786
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17530.3 | Symbols: | phosphoglucosamine mutase family prot... 2933 0.0
> AT5G17530.3 | Symbols: | phosphoglucosamine mutase family protein
| chr5:5777595-5782014 FORWARD LENGTH=2019
Length=2019
Score = 2933 bits (1588), Expect = 0.0
Identities = 1721/1787 (96%), Gaps = 2/1787 (0%)
Strand=Plus/Plus
Query 1 AAAGAGAACCTGACCCATTCATGTCTGCTTTACTTCCCTGTTCAAGCGGGAAGCTGACAT 60
||||||||||||||| ||||||||| |||||||||||||| |||| | |||| || |||
Sbjct 201 AAAGAGAACCTGACCTGTTCATGTCTACTTTACTTCCCTGTCCAAGAGAGAAGATGGCAT 260
Query 61 TGAACCTCAACTCTTCCATGCGTGCCCACTCTTTGTCTAAATACCAGACTGTTCTTTCAA 120
| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 261 TTAACCTCAACTCTTCCATGCGTGCCCACACTTTGTCTAAATACCAGTTTGTTCTTTCAA 320
Query 121 AGCAAAGAACTTTTTACTGCAATGCTGCTTCGTCAAGTGTTACTGTGCCATCTCTTGACA 180
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 321 AGCAAAGAACTTTTTACTGCAATGCTACTTCGTCAAGTGCTACTGTGCCATCTCTTGACA 380
Query 181 AAACTGATTTTCTAAAGCTCCAAAACGGCAGCGATATTCGGGGTGTAGCGGTCCCTGGGG 240
||| ||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 381 AAAATGATTTTCTGAAGCTCCAAAACGGCAGTGATATTCGGGGTGTAGCGGTCACTGGGG 440
Query 241 TTGAGGGGGAACCTGTAAGCCTTCCTGAACCAGTGACTGAAGCCATAGCTGCTGCTTTTG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 TTGAGGGGGAACCTGTAAGCCTTCCTGAACCAGTGACTGAAGCCATAGCTGCTGCTTTTG 500
Query 301 GGCAATGGCTGTTACACAAGAAGAAGGCTGAATCCCGGCGTTTGAGAGTATCGGTTGGCC 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 501 GGCAATGGCTGTTACACAAGAAGAAGGCTGAATCCCGGCGTTTGAGAGTATCTGTTGGCC 560
Query 361 ATGACTCTCGCATATCTGCACAAACCTTGCTGGAGGCGGTTTCTCGAGGTCTTGGTGTTT 420
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 561 ATGACTCTCGCATCTCTGCACAAACTTTGCTGGAGGCGGTTTCTCGAGGTCTTGGTGTTT 620
Query 421 CTGGATTAGATGTTGTTCAGTTCGGGTTAGCATCAACACCAGCAATGTTTAATAGCACAT 480
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 621 CTGGATTAGATGTTGTTCAGTTTGGATTAGCATCAACACCAGCAATGTTTAATAGCACAT 680
Query 481 TGACTGATGATGAGTCATTCTTGTGCCCAGCTGATGGGGCTATCATGATAACAGCAAGCC 540
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 681 TGACTGAAGATGAGTCATTCTTGTGCCCAGCTGATGGGGCTATTATGATAACAGCAAGCC 740
Query 541 ATCTTCCTTACAACAGGAACGGTTTCAAGTTCTTTACCAGTGATGGAGGGCTTGGGAAGG 600
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 741 ATCTTCCTTACAACAGGAACGGTTTCAAGTTCTTTACCAGTGATGGAGGACTTGGGAAGG 800
Query 601 TTGATATCAAAAACATTTTGGAACGAGCTGCAGATATTTACAAGAACCTTTCTGATGAAA 660
|||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 801 TTGATATCAAGAACATTTTGGAGCGAGCTGCAGATATTTACAAGAAGCTTTCTGATGAAA 860
Query 661 ATTTGAGGAAATCACAAAGAGAAAGTTCTTCTATTACAAAGGTTGACTACATGTCAGTAT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 861 ATTTGAGGAAATCACAAAGAGAAAGTTCTTCTATTACAAAGGTTGACTACATGTCAGTAT 920
Query 721 ACACCTCTGGTCTTGTAAAGGCAGTTCGGAAAGCAGCAGGAGATTTAGAGAAGCCTCTAG 780
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 921 ACACCTCTGGTCTTGTAAAGGCAGTCCGGAAAGCAGCAGGAGATTTGGAGAAGCCTCTAG 980
Query 781 AGGGATTTCATATAGTTGTTGATGCTGGAAATGGAGCTGGAGGATTTTTTGCTGCCAAGG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 AGGGATTTCATATAGTTGTTGATGCTGGAAATGGAGCTGGAGGATTTTTTGCTGCCAAGG 1040
Query 841 TGCTTGAGCCTTTAGGAGCAATTACTTCTGGCAGTCAATTTCTGGAACCAGATGGTATGT 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1041 TGCTTGAGCCTTTAGGAGCAATTACTTCTGGCAGTCAATTTCTGGAACCAGATGGTATGT 1100
Query 901 TTCCAAATCACATCCCTAATCCGGAAGATAAGTCGGCAATGGAAGCTATAACCAAGGCTG 960
| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1101 TCCCAAATCATATCCCTAATCCGGAAGATAAGGCGGCAATGGAAGCTATAACCAAGGCTG 1160
Query 961 TTCTTGATAATAAGGCTGATTTGGGTATCATCTTTGATACTGATGTTGATAGGTCTGCTG 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 TTCTTGATAATAAGGCTGATTTGGGTATCATCTTTGATACTGATGTTGATAGGTCTGCTG 1220
Query 1021 CTGTGGATTCAACTGGCCGTGAGTTCAACCGTAATCGTCTTATTGCCTTGCTTTCAGCCA 1080
||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1221 CTGTGGATTCATCTGGCCGTGAATTCAACCGTAATCGTCTTATTGCCTTGCTATCAGCCA 1280
Query 1081 TTGTTCTAGAGGAACACCCTGGCACAACTATTGTTACAGACAGCGTCACTTCGGACGGCC 1140
||||||||||||||||||||||||||||||| ||||| || || |||||||||||||| |
Sbjct 1281 TTGTTCTAGAGGAACACCCTGGCACAACTATAGTTACGGATAGTGTCACTTCGGACGGTC 1340
Query 1141 TGACCTCATTTATTGAAAAGAAGCTTGGCGGAAAGCATCACAGGTTCAAAAGAGGTTACA 1200
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1341 TGACCTCATTTATTGAGAAGAAGCTTGGCGGAAAGCATCACAGGTTCAAAAGAGGTTACA 1400
Query 1201 AGAATGTCATTGATGAAGCTATTCGCTTGAACTCGGTTGGAGAAGAATCACATCTGGCTA 1260
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1401 AGAATGTCATTGACGAAGCTATTCGCTTGAACTCGGTTGGGGAAGAATCACATCTGGCTA 1460
Query 1261 TAGAAACCAGTGGTCATGGAGCTCTAAAAGAAAACCATTGGCTTGACGATGGGGCGTATC 1320
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||
Sbjct 1461 TAGAAACCAGTGGTCATGGAGCTCTAAAGGAAAACCATTGGCTCGACGATGGGGCCTATC 1520
Query 1321 TCATGGTAAAAATCTTGAATAAACTGGCTGCGGCCCGAGCTGCTGGTCAAGGGAGTGGCA 1380
|||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1521 TCATGGTAAAAATCCTGAACAAACTAGCTGCGGCCCGAGCTGCTGGTCAAGGGAGTGGCA 1580
Query 1381 GCAAAGTTTTAACAGATCTTGTTGAAGGTCTGGAGGAGCCCAAAGTGGCTTTAGAACTGA 1440
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1581 GCAAAGTTTTAACAGATCTTGTTGAAGGTCTGGAAGAGCCCAAAGTGGCTTTAGAACTGA 1640
Query 1441 GGCTTAAAATCGACAAGAATCACTCC-GACCTTGAAGGAAGTGATTTCCGGGAGTATGGA 1499
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1641 GGCTTAAAATCGACAAGAATCAC-CCTGACCTTGAAGGAAGTGATTTCCGGGAGTATGGA 1699
Query 1500 GAGAAGGTCCTGCAACACGTTTCAAACTCAATAGAAACAAATCCAAATCTTAAAAGAGCT 1559
|||||||||||||||||||| || |||||||||||||||||||||||||||| || ||||
Sbjct 1700 GAGAAGGTCCTGCAACACGTGTCGAACTCAATAGAAACAAATCCAAATCTTATAATAGCT 1759
Query 1560 CCAGTTAACTATGAAGGGATCCGCGTTTCGGGCTTTGGTGGATGGTTTCTTCTTAGACTT 1619
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1760 CCAGTTAACTACGAAGGGATCCGCGTTTCGGGCTTTGGTGGATGGTTTCTTCTCAGACTT 1819
Query 1620 TCTCTCCACGATCCTGTTCTTCCCCTTAACATCGAGGCGCAGAGTGAGGATGATGCTGTG 1679
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1820 TCTCTCCATGATCCTGTTCTTCCCCTTAACATCGAGGCACAGAGTGAGGATGATGCTGTG 1879
Query 1680 AAGTTAGGCCTTGTGGTTGCTACGGCAGTGAAGGAATTCAATGCTTTGGACACCTCTGCC 1739
|| ||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||
Sbjct 1880 AAATTAGGCCTTGTGGTTGCTACGACAGTGAAGGAGTTCAATGCTTTGGACACCTGTGCC 1939
Query 1740 TTGTCCAACCTCACTCACTCCTCCTAAGATTGGCATGGAACAATGTA 1786
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1940 TTGTCCAACCTCACTCACTCCTCCTAAGATTGGCATGGAACAATGTA 1986
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88352959200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5