BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941266
Length=784
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17550.1 | Symbols: PEX19-2, AtPEX19-2 | peroxin 19-2 | chr5... 1251 0.0
> AT5G17550.1 | Symbols: PEX19-2, AtPEX19-2 | peroxin 19-2 | chr5:5786510-5788239
REVERSE LENGTH=1044
Length=1044
Score = 1251 bits (677), Expect = 0.0
Identities = 734/762 (96%), Gaps = 1/762 (0%)
Strand=Plus/Plus
Query 5 AGAGACGACTCGAGAATATGGCCAACGACACTCACACCGATGACTTAGACGAGCTTCTCG 64
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 58 AGAGA-GACTCGAGAATATGGCCAACGATACTCACACCGATGACTTAGACGAGCTTCTCG 116
Query 65 ATAGTGCCTTGGATGATTTCAAGGATCTCAATCTTACTCAAAGAAATGGAGGGGTTAAGA 124
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 117 ATAGTGCCTTGGATGATTTCAAGGATCTTAATCTTACTCAAAGAAATGGAGGGGTTAAGA 176
Query 125 AAGAAGAGAGTGGTAAAAAGGAGACAGAGTCATTGCCGAGTGGGGTTCAAGGTCTTGGAA 184
|||||||| ||| |||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 177 AAGAAGAGGGTGATAAAAAAGAGACAGAGTCATTGCCAAGTGGGGTTCAAGGTCTTGGAA 236
Query 185 TGGGGTTACCAGATATGAGGAGTAAGAAGAAAGGAAAGCAAAAGATTGCTAAAGAGGACC 244
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 237 TGGGGTTACCAGATATGAGGAGTAAGAAGAAAGGAAAGAAAAAGATTGCTAAAGAGGACC 296
Query 245 ATGTTGCTGAGGCTCTTGATAAACTCAGGGAACAAACCAGAGAAACTGTGAAGGGACTTG 304
||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 297 ATGTTACTGAGGCACTTGATAAACTCAGGGAACAAACTAGAGAAACTGTGAAGGGACTTG 356
Query 305 AGTCCTTGTCATCGAAGCAGCAGCCTACAGGTTCTGATGATGCTATGGTCGAAGATTGGA 364
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 357 AGTCCTTGTCATCGAAGCAGCAACCTACAGGTTCTGATGATGCTATGGTTGAAGATTGGA 416
Query 365 TCAAGCAATTCGAGGATCTTGCTGGGTCTAACGACTTGGAGTCAATAGTGGACACGATGA 424
|||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 417 TCAAGCAATTCGAGAATCTTACTGGGTCTAACGACTTGGAGTCGATAGTGGACACGATGA 476
Query 425 TGCAACAGCTATTATCGAAGGATATTCTTCACGAACCAATGAAAGAGATTGGTGCAAGAT 484
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TGCAACAGCTGTTATCGAAGGATATTCTTCACGAACCAATGAAAGAGATTGGTGCAAGAT 536
Query 485 ACCCGAAATGGCTAGAAGAGCATGAATCCAGTCTAAACAAGGAGGAATTCGAACGTTACT 544
|||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
Sbjct 537 ACCCAAAATGGCTAGAAGAGCATGAATCCAGTCTAAACAAGGAAGAATTCGATCGTTATT 596
Query 545 CGCGCCAGTATGAACTAATCAAAGAACTCAACTTGGTGTATGAGAACGAACCAAACAATT 604
| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 597 CACGCCAGTATGAACTTATCAAAGAACTCAACTTGGTGTACGAGAACGAACCAAACAATT 656
Query 605 CGACCAAGATAATGGAGATTATGCAGAAGATGCAAGAGTGTGGACAACCACCGAGTGATA 664
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CGACCAAGATAATGGAGATAATGCAGAAGATGCAAGAGTGTGGACAACCACCGAGTGATA 716
Query 665 TAGTGCAAGAGATGGATCCTGGGTTTGATTTCGCGAGTTTGGGCCAAATGTCTCCGGACA 724
|||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||
Sbjct 717 TAGTGCAAGAGATGGATCCTGGCTTTGATTTCGCTAGTCTGGGCCAAATGTCTCCGGACA 776
Query 725 TGCTCGAGTCTTCACCAAATTGTTGTGTAATGTGAGGGAAGA 766
||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TGCTCGAGTCTTCACCAAATTGTTGTGTAATGTGAGGGAAGA 818
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38127717573
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5