BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941267
Length=565
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17560.1 | Symbols: | BolA-like family protein | chr5:57884... 920 0.0
> AT5G17560.1 | Symbols: | BolA-like family protein | chr5:5788454-5789923
FORWARD LENGTH=806
Length=806
Score = 920 bits (498), Expect = 0.0
Identities = 549/572 (96%), Gaps = 9/572 (2%)
Strand=Plus/Plus
Query 2 CTCTCAAGTCTCTCAAGCAATGGCGCAGACCTTAATGGCGACAACTCGTCCGTACGTTCT 61
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2 CTCGCAAGTCTCTCAAGCAATGGCGCAGACATTAATGGCGACAACTCGTCCGTACGTTCT 61
Query 62 TCTCTCTTCCACAAGAGCGAGTCTTTATCTCCTTTTTCAATCTTCAAAGAGACCCTTCGC 121
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 62 TCTCTCTTCCACAAGAGCGAGTCTTTATCGCCTTTTTCAATCTTCAAAGAGACCCTTCGC 121
Query 122 TTCATTCTCAGCTCCTCTCGTGAAAATCACCAACTCGAGATGTGTAAGCGCCGTTTTGTC 181
||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||
Sbjct 122 TTCATTCTCAGCTCCTCTCGTGAGATTCACTAACTCGAGATGTGTAAGCGCCGTTTTGTC 181
Query 182 TCGTAAAGAGACTGCGCCGTCGTCGATTTACGGC---A-A-----TAGGGTTTCTGGGTT 232
|||||||||||||||||||||||||||||||||| | | |||||||||||||||
Sbjct 182 TCGTAAAGAGACTGCGCCGTCGTCGATTTACGGCAATAGAGTTTCTAGGGTTTCTGGGTT 241
Query 233 TGGTGTTTTGGACATTCGCAGCCGTAATTTCAGTACCAGATCCTCTCAAATCAATGATGC 292
||||| ||||||||||||||||| |||||||||||| | |||||||||||||||||||||
Sbjct 242 TGGTGCTTTGGACATTCGCAGCCTTAATTTCAGTACTAAATCCTCTCAAATCAATGATGC 301
Query 293 TGGTTCTATTGATCAAACCCTTATGCAATCCATGGAGCAAAAGATCAAAGAACAATTGAA 352
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 302 TGGTTCTATTGATCAAACCCTTATGCAATCCATGGAGCTAAAGATCAAAGAACAATTGAA 361
Query 353 TGCAGAGTCGGTTACTGTAACGGATATGTCTGGAGATGGACGTCATGTCTGCATCAATGT 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 TGCAGAGTCGGTTACTGTAACGGATATGTCTGGAGATGGACGTCATGTCTGCATCAATGT 421
Query 413 TGTATCATCGGCTTTTGAGGGACAATCTGCAGTGAACAGACAACGGATGGTCTACAAAGC 472
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 422 GGTATCATCGGCTTTTGAGGGACAATCTGCAGTGAACAGACAAAGGATGGTCTACAAAGC 481
Query 473 CATTTGGGAAGAGCTTCAGAACGTTGTTCATGCCGTTGATCAAATGACAACAAAGACTCC 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 CATTTGGGAAGAGCTTCAGAACGTTGTTCATGCCGTTGATCAAATGACAACAAAGACTCC 541
Query 533 TTCTGAAGTTTGAAGCGTTAAATTTTCCAAAC 564
|||||||||||||||||||||||||||| |||
Sbjct 542 TTCTGAAGTTTGAAGCGTTAAATTTTCCGAAC 573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27126439380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5