BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941270
Length=645
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17590.1 | Symbols: | Putative membrane lipoprotein | chr5:... 826 0.0
> AT5G17590.1 | Symbols: | Putative membrane lipoprotein | chr5:5797371-5797949
REVERSE LENGTH=579
Length=579
Score = 826 bits (447), Expect = 0.0
Identities = 556/604 (92%), Gaps = 26/604 (4%)
Strand=Plus/Plus
Query 21 ATGGATCAGAGAAAAGGTGATCCAAGAATATACATTGTCACTTTTCTCTTCCTTTCATGT 80
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1 ATGGATCAGAGAAAAGGTGATCCAAGAATATACATTATCACTGTTCTCTTCCTTTCATGT 60
Query 81 ATCCTCATAGGAGGAGTCCTTTTAGGACTTTACCTGGTCCGTTCTGATCCGAACCCTCTG 140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ATCCTCATAGGAGGAGTCCTTTTAGGACTTTACCTGGTCCGTTCTGATCCGAACCCTCTG 120
Query 141 TTTCTACAAGCGGGTATGGTCTTCGTTGGTGTCCCTTGGCTCTTTTGGTTCTTGGCTTAC 200
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 TTTCTACAAGCGGGTATGGTCTTTGTTGGTGTCCCTTGGCTCTTTTGGTTCTTGGCTTAC 180
Query 201 GTTTACTCCTGCGTCCTCAAACCTTGCATCATCTTTGTTAGCAAGAGCAGCATCTTTGTT 260
||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||| |
Sbjct 181 GTTTACTCCTGCGTCCTCAAACCTTGCGTCATCTTTGTTAGCCAGAGCACCATCTTTAAT 240
Query 261 AGCAAGAGCGTTACCAGTTTCGATCCTGAGAAAGGCGATCCGGAGAAGAACGTCAATAAC 320
|||||||||||||||||||||||||| |||||||||||||| | || |
Sbjct 241 AGCAAGAGCGTTACCAGTTTCGATCCGGAGAAAGGCGATCC-----------T-AA---C 285
Query 321 AAGGTTCCGGAAAACGTCACGGCAACTTCGGATCCGGCGCCGAGGAATTCACCGAGGGAA 380
|||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 286 AAGGCTCCGGAAACCGTCACGACAACTTCGGATCCGGCGCCGAGGAATTCACCGAGGGAA 345
Query 381 GGTGAGAAGCATGTGCAATTCGGGAATGTGGTGGTTCTTGGGGATGAAGAAAGAGGCAGA 440
||||||||||| ||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 346 GGTGAGAAGCACGTGCAATTCGGGAATGTGGTGGTTCTTGGGGATGAAGAA-G-GT--G- 400
Query 441 GAAGGAGAAGAGGAAGATCACAACGAGAGTAGTTCTAATAATCTGATTCAGGATCATATG 500
||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 GAA--A-A-GAGGAAGATCACAACGAGAGTAGTTCTAATAATCTGATTCAGGATCATATG 456
Query 501 CGAATGGAAGAAGAAGAAAATCAAGAAAATGGTACATCGAATTCAA-GAAGCGATGATGA 559
||||| |||||||||||| ||||||||||||||| ||||||||||| || ||||||||||
Sbjct 457 CGAATCGAAGAAGAAGAAGATCAAGAAAATGGTAGATCGAATTCAAAGA-GCGATGATGA 515
Query 560 TGATAGTAGTGTCGATGAGGACTGCGATAGGACTCCATTGAGATTATCGATTGGAAACAA 619
||| ||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||
Sbjct 516 TGAGAGTAGTGTCGATGAGGACTGCGATAGGACTCCATTAAGAGTATCGAACGGAAACAA 575
Query 620 ATGA 623
||||
Sbjct 576 ATGA 579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31145171140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5