BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941274
Length=1294
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17630.1 | Symbols: | Nucleotide/sugar transporter family p... 2100 0.0
> AT5G17630.1 | Symbols: | Nucleotide/sugar transporter family
protein | chr5:5809334-5810962 FORWARD LENGTH=1629
Length=1629
Score = 2100 bits (1137), Expect = 0.0
Identities = 1238/1287 (96%), Gaps = 6/1287 (0%)
Strand=Plus/Plus
Query 11 TGCCTAAGCAATGATCTCCCTGAATCTATCTCCTTCCTTAAATCCGGGTCTCCTCCACAA 70
||| ||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 132 TGCTTAAACAATGATCTCCCTGAATCTATCTCCTTCCCTCAATCCGGGTCTCCTCCACAA 191
Query 71 GACCCGGAGCC-GTCAACAACCGACCCGTCTCTCTGCTCTTCTCGTCACCAACCCTAAAC 129
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 GACCCGGA-CCTGTCAACAACCGACCCGTCTCTCTGCTCTTCTCGTCACCAACCCTAAAC 250
Query 130 CCTTCAATCACAGATACCCACTAGGGCTTTTACCGATTCCCAATCTCCAGATTCGTGATG 189
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 251 CCTTCAATCACAGACACCCACTAGGGCTTTCACCGATTCCCAATCTCCAGATTCGTGATG 310
Query 190 CCGCCGCAAAACCCTTGCTTTCACTCTCCAACCCTGAGTCCTCATCTGGGTTCTCGAGAA 249
||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||
Sbjct 311 TTTCCGCAAAACCCTTGCTTTCACTCACAAACCCTGAATCCTCATCTGGGTTCTCGAGAA 370
Query 250 AACCCAGATCCATCGCCGCCGTTGGCTCATCGGATTCAAATCCAGACGAAAAATCCGATC 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 AACCCAGATCCATCGCCGCCGTTGGCTCATCGGATTCAAATCCAGACGAAAAATCCGATC 430
Query 310 TTGGCGAAGCGGAGAAGAAAGAGAAGAAAGCTAAGACTCTTCAGCTAGGGATTGTGTTTG 369
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 431 TTGGTGAAGCGGAGAAGAAAGAGAAGAAGGCTAAGACTCTTCAGCTAGGGATTGTGTTTG 490
Query 370 GTCTTTGGTATTTCCAAAACATCGTCTTCAACATCTTCAACAAAAAGGCACTCAATGTCT 429
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 GTCTTTGGTATTTCCAGAACATCGTCTTCAACATCTTCAACAAAAAGGCACTCAATGTCT 550
Query 430 TCCCTTATCCATGGCTTCTCGCTTCGTTTCAGCTCTTTGCAGGTTCTATTTGGATGCTTA 489
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 551 TTCCTTATCCATGGCTTCTCGCTTCGTTTCAGCTCTTCGCAGGTTCTATTTGGATGCTTG 610
Query 490 TCTTATGGTCCTTTAAGCTTTATCCTTGCCCTAAAATCTCCAAGCCTTTCATCATTGCTC 549
|||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 611 TCTTATGGTCCTTTAAGCTTTACCCCTGCCCTAAAATCTCCAAGCCTTTTATCATTGCTC 670
Query 550 TCCTTGGCCCTGCATTGTTTCACACTATTGGACACATCTCAGCTTGTGTCTCGTTCTCCA 609
||||||| ||||||||||| |||||||||||||| ||||||||||||||||| |||||||
Sbjct 671 TCCTTGGTCCTGCATTGTTCCACACTATTGGACATATCTCAGCTTGTGTCTCATTCTCCA 730
Query 610 AAGTCGCTGTTTCTTTCACTCATGTTATCAAATCAGCAGAGCCTGTCTTCTCTGTTATCT 669
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 AAGTCGCTGTTTCGTTCACTCATGTTATCAAATCAGCAGAGCCTGTCTTCTCTGTTATCT 790
Query 670 TCTCGTCTTTACTCGGTGATTCGTACCCGTTAGCTGTCTGGTTATCGATTCTTCCGATTG 729
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 791 TCTCGTCTTTACTCGGTGATTCGTATCCGTTAGCTGTCTGGTTATCGATTCTTCCGATTG 850
Query 730 TTATGGGTTGTTCTTTAGCTGCAGTCACTGAAGTCTCATTCAATTTAGGTGGATTATCAG 789
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 851 TTATGGGTTGTTCTTTAGCTGCAGTCACTGAAGTGTCATTCAATTTAGGTGGATTATCAG 910
Query 790 GAGCTATGATTAGTAATGTTGGTTTCGTCTT-ACGAAACATTTACTCTAAAAGAAGTC-T 847
|||||||||||||||| |||||||| ||||| | ||||||||||||||||| | || | |
Sbjct 911 GAGCTATGATTAGTAACGTTGGTTTTGTCTTGA-GAAACATTTACTCTAAACGTAG-CTT 968
Query 848 ACAGAGCTTTAAAGAGATTGATGGATTGAATCTATACGGTTGCATCAGTATACTCTCTCT 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 ACAGAGCTTTAAAGAGATTGATGGATTGAATCTATACGGTTGCATCAGTATACTCTCTCT 1028
Query 908 GCTTTATCTGTTTCCCGTGGCGATTTTCGTTGAAGGATCACATTGGGTTCAAGGTTACCA 967
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1029 GCTTTATCTGTTTCCCGTGGCGATTTTCGTTGAAGGATCACATTGGGTTCCAGGTTACCA 1088
Query 968 TAAAGCCATTGCATCTGTTGGGACACCATCAACGTTCTACTTTTGGGTTTTGCTCTCTGG 1027
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 TAAAGCCATTGCATCTGTTGGGACACCATCAACGTTCTACTTTTGGGTTTTGCTCTCTGG 1148
Query 1028 TGTCTTCTACCATCTGTACAACCAATCTTCTTACCAGGCACTCGACGAGATCAGTCCATT 1087
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1149 TGTCTTCTATCATCTGTACAACCAGTCTTCTTACCAGGCACTCGACGAGATCAGTCCATT 1208
Query 1088 GACTTTCTCTGTAGGGAACACAATGAAGCGAGTCGTGGTGATTGTCTCCACGGTTTTGGT 1147
|||||||||||| |||||||| ||||||||||||||||||||| ||||||| ||||||||
Sbjct 1209 GACTTTCTCTGTTGGGAACACGATGAAGCGAGTCGTGGTGATTATCTCCACTGTTTTGGT 1268
Query 1148 GTTTAGGAATCCTGTTAGACCTCTGAATGCTCTTGGATCAGCCATTGCGATTTTCGGTAC 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269 GTTTAGGAATCCTGTTAGACCTCTGAATGCTCTTGGATCAGCCATTGCGATTTTCGGTAC 1328
Query 1208 CTTCTTGTATTCTCAGGCCACCGCAAAAAAGAAGAAGATTGAAGTGGGAGGTGATAAGAA 1267
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1329 CTTCTTGTATTCTCAGGCCACTGCAAAGAAGAAGAAGATTGAAGTGGGAGGTGATAAGAA 1388
Query 1268 GAACTAAAGGTTTTAAGGGCAAATCCA 1294
||||||||||||||||| ||||| |||
Sbjct 1389 GAACTAAAGGTTTTAAGTGCAAAACCA 1415
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63654291060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5