BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941275
Length=1343
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17640.1 | Symbols: | Protein of unknown function (DUF1005)... 2093 0.0
> AT5G17640.1 | Symbols: | Protein of unknown function (DUF1005)
| chr5:5810935-5813284 REVERSE LENGTH=1813
Length=1813
Score = 2093 bits (1133), Expect = 0.0
Identities = 1275/1345 (95%), Gaps = 4/1345 (0%)
Strand=Plus/Plus
Query 1 TGGGGAAACATTTCTGACCTCTAATGGATCCCCAAGCCTTT-ATTCGCCTTTCCGTTGGC 59
|||||||||||||||||| | |||||||||| |||| |||| ||||| ||||| ||||||
Sbjct 380 TGGGGAAACATTTCTGACATTTAATGGATCCTCAAG-CTTTCATTCGTCTTTCGGTTGGC 438
Query 60 TCTCTTGCTTTGAGAACTCCCAAGATCCTTTTGAACTCTTCTTCAAAATCTGATGAGAAG 119
|||||||||||||||| ||||||| ||||| | |||||| ||||||||||| ||||||||
Sbjct 439 TCTCTTGCTTTGAGAATTCCCAAGGTCCTTATAAACTCTACTTCAAAATCTAATGAGAAG 498
Query 120 AAGAACTGTTCTTCTCAATGCTCTTGTGAAATTAAACTACGAGGCTTTCCTGTTCAAACA 179
||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 499 AAGAACTTTTCTTCTCAATGCTCTTGCGAAATAAAACTACGAGGCTTTCCTGTTCAAACA 558
Query 180 ACATCTATCCCTTTGATGCCGTCCCTCGATGCAGCTCCTGACCATCACAGCATTTCCACA 239
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 559 ACATCTATCCCTTTGATGCCGTCCCTTGATGCAGCTCCTGACCATCACAGTATTTCCACT 618
Query 240 AGCTTTTATCTTGAAGAATCTGATTTAAGAACTCTCCTGACCCCTGGATGCTTCTATAGT 299
|||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||
Sbjct 619 AGCTTTTATCTTGAAGAATCTGATTTAAGAGCTCTTTTGACACCTGGATGCTTCTATAGT 678
Query 300 CCTCATGCTCACTTGGAAATCTCGGTTTTTTCGGGTAAAAAGAGTTTGAATTGCGGGGTT 359
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 679 CCTCATGCTCACTTGGAAATCTCGGTTTTCACGGGTAAAAAGAGTTTGAATTGCGGTGTT 738
Query 360 GGT-GCTAAAAGACAGCAGATTGGGATATTTAAGTTGGAGGTAGGTCCTGAATGGGGAGC 418
||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 739 GGTGGC-AAAAGACAGCAGATTGGGATGTTTAAGTTGGAGGTAGGTCCTGAATGGGGAGA 797
Query 419 AGGAAAACCGATGATTCTATTCAATGGCTGGGTCAGTATTGGAAAGAACAAGCGGGATGG 478
||||||||| |||||||| |||||||| ||| ||||||||||||||| ||||||||||||
Sbjct 798 AGGAAAACCAATGATTCTTTTCAATGGTTGGATCAGTATTGGAAAGACCAAGCGGGATGG 857
Query 479 TGGTGCAGAGCTTCATTTGAAAGTGAAGCTTGATCCTGATCCTCGATATGTTTTCCAGTT 538
|| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 858 TGCTGCAGAGCTTCATTTGAAAGTGAAACTTGATCCTGATCCTCGATATGTTTTTCAGTT 917
Query 539 TGAGGATGTTACTACCTTGAGCCCTCAGATAGTTCAGCTCCGTGGCTCTGTCAAGCAACC 598
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 918 TGAGGATGTTACTACCTTGAGCCCTCAGATAGTTCAGCTCCGTGGCTCGGTCAAGCAACC 977
Query 599 TATCTTCAGTTGCAAATTTAGCCGAGACAGGGTGTCTCAAGTGGATCCGTTGAACGGGTA 658
||||||||||||||| |||||| ||||||||||||| || |||||||||||||| |||||
Sbjct 978 TATCTTCAGTTGCAAGTTTAGCAGAGACAGGGTGTCACAGGTGGATCCGTTGAATGGGTA 1037
Query 659 CTGGTCAAGTTCAGGCGATGGAACTGAGCTTGAGAGTGAGAGACGTGAGAGAAAAGGCTG 718
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1038 CTGGTCAAGTTCAGGCGATGGAACTGAGCTTGAGAGTGAGAGACGTGAAAGAAAAGGATG 1097
Query 719 GAAGGTGAAGATACATGATCTCTCTGGCTCTGCAGTTGCTGCTGCTTTCATAACAACTCC 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 GAAGGTGAAGATACATGATCTCTCTGGCTCTGCAGTTGCTGCTGCTTTCATAACAACTCC 1157
Query 779 CTTTGTCCCATCCAGTGGCTGTGATTGGGTCGCCAAGTCCAATCCGGGTGCTTGGCTTGT 838
||||| ||||||| ||| |||||||||||||| |||||||| |||||||||||||||||
Sbjct 1158 TTTTGTTCCATCCACTGGATGTGATTGGGTCGCAAAGTCCAACCCGGGTGCTTGGCTTGT 1217
Query 839 GGTCCGGCCTGACCCATCTCGACCCAACAGCTGGCAGCCTTGGGGAAAGCTCGAAGCTTG 898
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1218 GGTCCGGCCTGACCCATCTCGACCAAACAGCTGGCAGCCATGGGGAAAGCTCGAAGCTTG 1277
Query 899 GCGAGAACGCGGGATCAGAGACTCCGTGTGTTGCAGATTCCACCTTCTATCAAACGGGCT 958
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1278 GCGGGAACGCGGGATCAGAGACTCCGTGTGTTGCAGATTCCATCTTCTATCAAACGGTCT 1337
Query 959 AGAAGTTGGAGATGTTTTAATGTCTGAAATTCTCATCAGCGCTGAGAAAGGTGGGGAATT 1018
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1338 AGAAGTTGGAGATGTTTTAATGTCTGAAATCCTCATCAGCGCTGAGAAAGGTGGGGAATT 1397
Query 1019 TTTAATCGACACGGATAAACAGATGCTAACGGTTGCAGCTACCCCAATTCCAAGCCCGCA 1078
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1398 TTTAATCGACACGGATAAACAGATGCTAACAGTTGCAGCTACACCAATTCCAAGCCCGCA 1457
Query 1079 GAGTAGCGGAGACTTCTCAGGGTTGGGACAGTGTGTCTCTGGAGGCGGGTTTGTAATGAG 1138
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1458 GAGTAGTGGAGACTTCTCAGGGTTGGGACAGTGTGTCTCTGGAGGTGGGTTTGTAATGAG 1517
Query 1139 CTCGAGAGTGCAAGGGGAAGGGAAAAGCAGCAAGCCTGTGGTACAATTAGCTATGCGGCA 1198
|||||||||||||||||||||||||||||||||||| || ||||||||||||||| | ||
Sbjct 1518 CTCGAGAGTGCAAGGGGAAGGGAAAAGCAGCAAGCCCGTTGTACAATTAGCTATGAGACA 1577
Query 1199 TGTAACTTGTGTGGAAGATGCAGCCATTTTCATGGCACTTGCTGCAGCTGTTGATCTTAG 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1578 TGTAACTTGTGTGGAAGATGCAGCCATTTTCATGGCACTTGCTGCAGCTGTTGATCTTAG 1637
Query 1259 CATTCTGGCTTGTAAACCTTTCAGGAGAACGAGTCGGAGAAGGTTCCGGCATTACTCCTG 1318
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1638 CATTCTTGCTTGTAAACCTTTTAGGAGAACGAGTCGGAGAAGGTTCCGGCATTACTCCTG 1697
Query 1319 GTGAATAAAGGAATTCTCTTTTGTG 1343
||||| ||||||| |||||||||||
Sbjct 1698 GTGAAGAAAGGAACTCTCTTTTGTG 1722
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66114117765
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5