BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg941276

Length=538
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G17650.1 | Symbols:  | glycine/proline-rich protein | chr5:5...   627    4e-179


> AT5G17650.1 | Symbols:  | glycine/proline-rich protein | chr5:5816698-5818347 
REVERSE LENGTH=993
Length=993

 Score =  627 bits (339),  Expect = 4e-179
 Identities = 497/566 (88%), Gaps = 40/566 (7%)
 Strand=Plus/Plus

Query  1    TCTGAAATTGAAGTGTGaaaaaaaTGGGAAAGGATCAACATAATCACAGTGACAGAGGAT  60
            ||||||||||||||||| || |||||||||| ||||||||||| ||||||||||||||||
Sbjct  148  TCTGAAATTGAAGTGTG-AAGAAATGGGAAATGATCAACATAACCACAGTGACAGAGGAT  206

Query  61   TCTTCCACCACTTAGCAGGGTTTGCAGGCGGACATTACCGGCCTCACAGTCATGGTTATG  120
            |||||||| |||||||||||||||||||||| || |||| ||||||| |||||||||| |
Sbjct  207  TCTTCCACAACTTAGCAGGGTTTGCAGGCGGCCAATACCCGCCTCACGGTCATGGTTACG  266

Query  121  GTCATCACGGTCACGGTTATGAAGCTCCTTATCCATACCCGCCTCCTCCCCCTCCTCATC  180
            ||||||| ||||||||||||| | || ||||||||||||||||||||   ||||||| ||
Sbjct  267  GTCATCATGGTCACGGTTATGGATCTTCTTATCCATACCCGCCTCCT---CCTCCTCCTC  323

Query  181  ATGGCTATCCACCAGTTGCTTATCCTCCACACGGTGGTTACCCTCCAGCCGGTTATCCTC  240
            ||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||
Sbjct  324  ATGGCTATCCACCAGTTGCTTATCCTCCACATGGTGGTTACCCTCCTGCTGGTTATCCTC  383

Query  241  CCGCTGGCTATCCTCC------T---C------ACGGTTATCCATCTCACGGCTATCCCG  285
            ||||||| ||||||||      |   |      ||||||||||||||||||| |||||| 
Sbjct  384  CCGCTGGTTATCCTCCAGCCGGTTATCCTGCTCACGGTTATCCATCTCACGGTTATCCCC  443

Query  286  GTCCATCTCACTCAGGACATCACCATGGAGGCATAGGAGCAATTATAGCGGGTGGAGTGG  345
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  444  GTCCATCTCACTCAGGACATCACCATGGAGGCATAGGAGCGATTATAGCGGGTGGAGTGG  503

Query  346  CTGCAGCAGCTGGTGCTCACCATATGTCTCACCA---TGGACACTATGGTCATCATCATC  402
            ||||||||||||||||||||||||||||||||||   ||||||||||||||| || ||| 
Sbjct  504  CTGCAGCAGCTGGTGCTCACCATATGTCTCACCACCATGGACACTATGGTCACCACCAT-  562

Query  403  ACGGTCACGGCTATGGCTACGGGTATCACGGTCACGGAAAGTTCAAACACGG-AA----A  457
              ||||| ||||||||||||||||||||||||||||| |||||||||||||| ||    |
Sbjct  563  --GGTCATGGCTATGGCTACGGGTATCACGGTCACGGGAAGTTCAAACACGGTAAGTTCA  620

Query  458  A-CGC------T--GG-AAGCATGGCATGTTTGGGAAGCATAAGGGGAAATTCTTCAAGA  507
            | | |      |  || || || |||||||||||||||||||| ||||||||||||||||
Sbjct  621  AGCACGGAAAATTCGGTAAACACGGCATGTTTGGGAAGCATAAAGGGAAATTCTTCAAGA  680

Query  508  AATGGAAGTGATTGTTTTCCAAAAGA  533
            ||||||||||||||||||||||||||
Sbjct  681  AATGGAAGTGATTGTTTTCCAAAAGA  706



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25770117411


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5