BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941278
Length=982
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17670.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1423 0.0
> AT5G17670.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr5:5821060-5822736 FORWARD LENGTH=1088
Length=1088
Score = 1423 bits (770), Expect = 0.0
Identities = 912/979 (93%), Gaps = 16/979 (2%)
Strand=Plus/Plus
Query 3 ATAGCCACTAGCCAAAAA-ATGGCCTCGGCGATGGTTACATCGTTCAGGCTGGGGCCAAG 61
|||||||||| ||||||| |||||||||||||||||||||||| |||||||| ||||||
Sbjct 4 ATAGCCACTAACCAAAAAGATGGCCTCGGCGATGGTTACATCGCTCAGGCTGAGGCCAAA 63
Query 62 CTTCTCCGCCGCCACGTCACCATCCACCTCTTCTTCCACTAGCAACGTTAAACCCCGTCC 121
||||||||| ||||||||||| ||| ||||||||||| | | || || || ||| ||
Sbjct 64 CTTCTCCGCAGCCACGTCACCCTCCTCCTCTTCTTCCGCCGGAAATGTCAAGTACCGACC 123
Query 122 CGCTGTGATTCTCCCGGGTTTAGGGAACAATTCAGGAGACTACAAGAAGCTGGAGGTAAC 181
||| || |||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 124 CGCCGTAATTCTCCCGGGTTTAGGGAATAATACAGGAGACTACAAGAAGCTGGAGGTAAC 183
Query 182 ATTAGGTGAGTACGGTGTTCCTGCGGTGGTTGCAGCTGTATCAAGGCTTGATTGGTTTAG 241
||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 184 ATTGGGTGAATACGGTGTTCCTGCTGTGGTTGCAGCTGTATCAAGGCTTGATTGGTTTAG 243
Query 242 AAATGCAGCCGGTTTGGTTGATCCAGCCTACTGGCGTGGCACGCTTCGCCCTCGTCCTGT 301
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 244 AAATGCAGCCGGTTTGGTTGATCCAGCCTACTGGCGTGGCACGCTCCGCCCTCGTCCTGT 303
Query 302 TCTTGATTGGTACTTGAATAGAATTGATGATGCAGTCCGTGAAGCCAATGAATTAGCTCA 361
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 304 TCTTGATTGGTACTTGAATAGAATTGATGATGCAGTCCGTGAAGCCAATGAGCTAGCTCA 363
Query 362 AGGTCAAGGATTGTCTTTGATTGGACACTCAGCTGGAGGATGGCTTGCTCGAGTTTACAT 421
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 AGGTCAAGGATTGTGTTTGATTGGACACTCAGCTGGAGGATGGCTTGCTCGAGTTTACAT 423
Query 422 GGAAGAATACGGAAACTCTGATATCTCCTTGTTGTTGACACTTGGTACGCCTCACTTACC 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 GGAAGAATACGGAAACTCTGATATCTCCTTGTTGTTGACACTTGGTACGCCTCACTTACC 483
Query 482 ACCACCGAGAGGACAATCCGGGG-TTATTGATCAAACAAGAGGTCTTCTCTATTATGTCG 540
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 484 ACCACCGAGAGGACT-TCCGGGGGTTATTGATCAAACAAGAGGTCTTCTCTATTATGTCG 542
Query 541 AAGAGAATTGTGCAAAAGCCGTTTACACTCCTGAGCTGAGATATGTCTGTATTGCCGGGA 600
||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||
Sbjct 543 AAGAGAATTGTGCAAAAGCTGTTTACACTCCTGAGCTGAAATATGTCTGTATCGCCGGGA 602
Query 601 GATACATTCGTGGAGCTCGTTTGGTGGACAATGCAGATGCAAACGTTGATTCCGATGTGA 660
||||||||||||||||||||||||| ||||||||||||||| | ||||||| ||||| |
Sbjct 603 GATACATTCGTGGAGCTCGTTTGGTTGACAATGCAGATGCAGATATTGATTCTGATGTAA 662
Query 661 CTGTTGAAATCGACAATGGAGAAGGGATTTCAGAACTTGCTATAGCAAGCAACAAGAAGA 720
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 CTGTTGGAATCGACAGTGGAGAAGGGATTTCAGAACTTGCTATAGCAAGCAACAAGAAGA 722
Query 721 GCGGTTCTTCGGGGCCAAGTTTCCGTGCTCGTTTTGTAGGGCAAGGATACAAGCAAGTAT 780
| ||| ||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 723 GTGGTACTT----------T--CCGTGCTCGTTTTGTAGGGCAAGGATACAAGCAAGTAT 770
Query 781 GTGGAAGAGCTGATGTGTGGGGTGATGGAGTGGTTCCTGAGGTCTCAGCTCATCTTGAAG 840
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 771 GTGGAAGAGCTGATGTGTGGGGTGATGGAGTAGTTCCTGAGGTTTCAGCTCATCTTGAAG 830
Query 841 GTGCACTTAATGTTAGCTTCGACGGTGTTTACCACTCGCCTGTTGGCTCAGACGATGAAA 900
|||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct 831 GTGCACTTAATGTTAGCTTCGACGGTGTTTACCATTCACCTGTTGGTTCAGACGATGAAA 890
Query 901 CCAGACCTTGGTATGGTTCACCGGCTATTGTAAAGGACTGGATTCACCACCTTCTTGAGT 960
|||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 891 CCAGACCTTGGTATGGCTCACCGGTTATTGTAAAGGACTGGATTCACCACCTCCTTGAGT 950
Query 961 GATTTTTACAACATTGATT 979
|||||| |||||| |||||
Sbjct 951 GATTTT-ACAACACTGATT 968
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48074078679
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5