BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941283
Length=1024
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17710.2 | Symbols: EMB1241 | Co-chaperone GrpE family prote... 1626 0.0
> AT5G17710.2 | Symbols: EMB1241 | Co-chaperone GrpE family protein
| chr5:5839343-5841728 REVERSE LENGTH=1287
Length=1287
Score = 1626 bits (880), Expect = 0.0
Identities = 977/1025 (95%), Gaps = 2/1025 (0%)
Strand=Plus/Plus
Query 1 CTTCTCTTTCGCCGAACTCTTCAATGGCCGGTCTACTCAAAACGCCGTCTTTACATCTCA 60
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 67 CTTCTCTTTCTCCGAACTCTTCGATGGCCGGTCTACTCAAAACGCCGTCTTTACATCTCA 126
Query 61 CACCAACGCTTCTTCATGCTCCCTCTGTACCCTTTAAGCCCTTTTGTGTCTCCTTT-GCC 119
||||||| |||||||||||||| ||||||||||||||||||||||| || | |||| |||
Sbjct 127 CACCAACTCTTCTTCATGCTCCTTCTGTACCCTTTAAGCCCTTTTGCGTAT-CTTTCGCC 185
Query 120 GGAGGAAGAAATACCAGCGTCTCACTCTCACGCCGAGCTTCTCTCCGGTCTGTCTCTAGC 179
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 186 GGAGGAAGAAACGTTAGCGTCTCACTCTCTCGCCGAGCTTCTCTCCGGTCTGTCTCTAGC 245
Query 180 CGCTATCCTCTCCGGTTATTGAACCTCGTACCCTTTGCTTCGGGAGAAGCTGAGACGACG 239
||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 246 GGCTATCCTCTCCGCTTACTAAACCTCGTACCCTTTGCTTCGGGAGAAGCTGAGACGACG 305
Query 240 GAGACGGAGGTAGAATCGAACGAACCCGAAGTTCAGGAGACGGATGGTGCTATTGATGTG 299
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 306 GAGACGGAGGTGGAATCGAACGAACCCGAAGTTCAGGAGACGGATGGTGCTGTTGATGTC 365
Query 300 GAGAATGAAAATGCCGGTGCTAAGGAGGGTGAAGCTGAGGAAGAAGAAGCAGCTGTTGTC 359
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 366 GAGAATGAAAATGCCAGTGCTGAGGAGGGTGAAGCTGAGGAAGAAGAAGCAGCTGTTATC 425
Query 360 ACAGCATTGCTCAATTCATATAAAGAAGCTTTAGCAGACAACAACGAGGGGAAAATTGCT 419
||||| ||||| || || ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 426 ACAGCGTTGCTGAAATCCTATAAAGAAGCTTTAGCAGACAACAACGAGGGGAAGATTGCT 485
Query 420 GAGATAGAAGCATCTTTAAAGTCCATAGAAGATGAAAAATTTCTGCTTGAGGATAAAGTA 479
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 486 GAGATAGAAGCATCTTTAAAGTCCATAGAAGATGAAAAATTTCTGCTTGCGGATAAAGTA 545
Query 480 GCTTCTTTATCCAATGAATTATCGGTGGAGAGGGATCGGCTCATTAGAATCAGTGCAGAT 539
|| |||||||||||||| ||||||||||||||||||||||| || |||||||||||||||
Sbjct 546 GCGTCTTTATCCAATGAGTTATCGGTGGAGAGGGATCGGCTTATAAGAATCAGTGCAGAT 605
Query 540 TTCGACAACTTCAGGAAGAGGACAGAGAGGGAAAGGCTAAACCTTGTTTCAAATGCTCAA 599
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 606 TTCGACAACTTCAGGAAGAGGACTGAGAGGGAAAGGCTAAACCTTGTTTCAAATGCTCAA 665
Query 600 GGAGAGGTTGTAGAGAATCTTTTGGCTGTTTTGGATAATTTCGAAAGAGCTAAATCCCAA 659
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 666 GGAGAGGTTGTAGAGAATCTTTTGGCTGTTTTGGATAATTTCGAGAGAGCTAAATCCCAA 725
Query 660 ATTAAGGTGGAGACTGAGGGAGAAGAGAAAGTCACTAATAGCTATCAGAGCATATACAAA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 ATTAAGGTGGAGACTGAGGGAGAAGAGAAAGTCACTAATAGCTATCAGAGCATATACAAA 785
Query 720 CAGTTTGTAGAAATTCTGGGATCACTTGGTGTTATCCATGTGGAGACAGTCGGCAAGCAG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 786 CAGTTTGTAGAAATTCTGGGATCACTTGGTGTTATCCATGTGGAGACAGTCGGCAAGCAG 845
Query 780 TTTGATCCAATGCTACACGAGGCAATAATGAGAGAAGATTCTGCGGAATACGAAGAGGGT 839
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 846 TTTGATCCAATGCTACATGAGGCAATAATGAGAGAAGACTCTGCGGAATACGAAGAGGGT 905
Query 840 ATAGTACTAGAAGAATACAGGAAAGGTTTCTTGCTAGGCGAAAGGCTTTTACGTCCTTCA 899
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 906 ATAGTACTAGAAGAATACAGGAAAGGTTTCTTGCTAGGTGAAAGGCTTTTACGTCCTTCA 965
Query 900 ATGGTGAAAGTATCAGCTGGACCCGGACCAGAAAAGCCTCGTGAAGCTGAAGGAGAAGAA 959
||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||||
Sbjct 966 ATGGTGAAAGTATCAGCTGGACCTGGACCAGAAAAGCCCCTTGAAGCTGAAGGAGAAGAA 1025
Query 960 GCAACTGCACAAGGAAGCTCAGAAGAAGAAGCTTCTTCATCTTGATATTGAAGATAATCA 1019
|| || |||||||||||| ||||||||||| | |||||||||||| ||||||||| ||||
Sbjct 1026 GCCACAGCACAAGGAAGCGCAGAAGAAGAATCATCTTCATCTTGAAATTGAAGATGATCA 1085
Query 1020 AGACT 1024
|||||
Sbjct 1086 AGACT 1090
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50183912853
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5