BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941288
Length=1638
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75940.1 | Symbols: ATA27, BGLU20 | Glycosyl hydrolase super... 449 3e-125
AT2G44490.1 | Symbols: PEN2, BGLU26 | Glycosyl hydrolase superf... 137 3e-31
> AT1G75940.1 | Symbols: ATA27, BGLU20 | Glycosyl hydrolase superfamily
protein | chr1:28511168-28514284 FORWARD LENGTH=1878
Length=1878
Score = 449 bits (243), Expect = 3e-125
Identities = 1078/1461 (74%), Gaps = 138/1461 (9%)
Strand=Plus/Plus
Query 148 TTTCCCTCAAGGTTTTATTTTTGG-AGCTGCTTCTGCCGCATTTCA-GTATGAAGGTGCG 205
||||||| ||||||| |||||||| | | || |||| || ||||| || |||||| ||
Sbjct 153 TTTCCCTAAAGGTTTCATTTTTGGTA-CCGCAACTGCTGCTTTTCAGGT-TGAAGGAGCT 210
Query 206 GTCCACGAAGGATGCAGGGGTCCAAGTATGTGGGA-TTACTATACCCTTAAACAT-CCTG 263
|| | |||||||| || |||||||| |||||||| || || ||| ||| | ||
Sbjct 211 GTAAATGAAGGATGTAGAGGTCCAAGCATGTGGGACGTA-TACACCAAGAAA-TTCCCAC 268
Query 264 AGAGGA-CAAACAATGATAATGCCGATGTAGCAGTTGATTTCTACCATCGTTACAAGGAA 322
| | | || || | |||||||| || || || ||||||||||||||||||||||||
Sbjct 269 ATA-AATGTAATTATCACAATGCCGACGTTGCTGTCGATTTCTACCATCGTTACAAGGAA 327
Query 323 GATATTCA-GTT-ATTGAAGAAA-CTAAACA-TGGACGG-TTTCAGATTCTCTTTTTCAT 377
||||| || ||| || ||| ||| || |||| || | || ||| ||||| || || |||
Sbjct 328 GATAT-CAAGTTGAT-GAA-AAATCTGAACACTG-ATGGCTTT-AGATTTTCCATTGCAT 382
Query 378 GGCCCCGAATATTTCCTCATGGAAGAAAGGATAAGGGCGTTAGCAAGGTGGGTGT-CAAG 436
||||| ||||||| || ||||| || | ||| || || | ||||| | ||||| || |
Sbjct 383 GGCCCAGAATATTCCCCCATGGTAGGATGGAGAAAGGAATAAGCAAAGCAGGTGTGCA-G 441
Query 437 TTTTACCACGATCTTATAGACGAGCTTCTTGCAAATGGTATAACTCCACTAGCAACGGTC 496
| |||||||||||| || || ||||| || |||||||||||||| ||| ||| ||| ||
Sbjct 442 TATTACCACGATCTGATCGATGAGCTCCTCGCAAATGGTATAACACCATTAGTAACTGTT 501
Query 497 TTCCATTGGGACATTCCTCAAGACCTAGAAGATGAATACGGCGG-TTTTCTAAGCGAACG 555
|| || ||||||| |||||||||| ||||||||||||| || || |||| ||||||| ||
Sbjct 502 TTTCACTGGGACACTCCTCAAGACTTAGAAGATGAATATGGTGGCTTTT-TAAGCGACCG 560
Query 556 TGTAATAGATGATTTTGTTGAGTTTGCCAACTTCACGTTC-AACGAGTATGGCCACAAAG 614
||||| | |||||| |||| ||| |||||||| ||| || ||||| || ||||||
Sbjct 561 CATAATAAAGGATTTTACGGAGTATGCAAACTTCACATTCCAA-GAGTACGGAGACAAAG 619
Query 615 TGAAGAAGTGGATCACGTTCAACGAGCCGTGGGTGTAT-AG-CAGAGCCGGTTACGACAT 672
||||| | |||||||| || ||||| || ||||||| | || | |||| || ||||||||
Sbjct 620 TGAAGCATTGGATCACATTTAACGAACCATGGGTGT-TCAGTC-GAGCTGGCTACGACAT 677
Query 673 AGGGAAGAAAGCGCCGGGACGTTGCTCGCAA-TATGTCAA----CA---AGAC-T-TGTC 722
||||| ||||| ||||||||||| || || || |||| || ||| | ||||
Sbjct 678 TGGGAACAAAGCACCGGGACGTTGTTCT-AAGTACATCAAAGAACATGGAGAGATGTGTC 736
Query 723 TTGGAGGGA-GTTCAGGGCACGA-GCTTTACATAGTCAGCCACAATC-TACTTTTAGCTC 779
| | ||| | ||||| ||||| |||| | || || || || || | | || || || |
Sbjct 737 ACG-ATGGACGGTCAGGACACGAAGCTT-ATATCGTTAGTCATAA-CATGCTCTTGGCAC 793
Query 780 ATGCCGAAGCCGTTCATGAGTTTAGAAAATGCG-CAAAGTGCAAAGGTGGGAAGATCGGG 838
||||||| |||||| ||| ||||| ||||||| ||| |||||||||||| || || |||
Sbjct 794 ATGCCGATGCCGTTGATGCCTTTAGGAAATGCGACAA-GTGCAAAGGTGGTAAAATTGGG 852
Query 839 ATTGCGCATAGTCCTTCTTGGTTCGAGCCCCACG--CTCTTG-AGTCTAGTCCACATGCC 895
||||| || ||||| ||||||| ||| | || | |||| | | | || ||| |
Sbjct 853 ATTGCTCACAGTCCAGCTTGGTTTGAGGCTCATGAGCTCTCGGA-TGAAGAGCAC--GA- 908
Query 896 AATGTTTCTGTTGAAC-GAGCCCT-A--GAGTTCATGTTGGGATGGCACATGAATCCAAC 951
|| | |||| ||| | ||| | | || ||||| ||||||||||| || |||| ||
Sbjct 909 AAC-TC-CTGT--AACTG-GCC-TGATTGACTTCATATTGGGATGGCATTTGCATCCGAC 962
Query 952 CACATATGGTGATTATCCACAGAT-AATGAAGGATCA-AGTCGGAGATCGGTTGCCTAAA 1009
||||||||| ||||||||||| || |||||||||||| | ||||| |||| |||| |||
Sbjct 963 CACATATGGAGATTATCCACA-ATCAATGAAGGATCACA-TCGGACATCGACTGCCGAAA 1020
Query 1010 TTCACAGAGG-ATCA-AAAGCAGAAACTGAAGA-TGTCATATGATTTTGTTGGGATCAAT 1066
|||||||||| | || |||| |||| |||| | | ||| ||||||||| || |||||
Sbjct 1021 TTCACAGAGGCA-CAGAAAG-AGAAGTTGAAAAAT-TCAGCTGATTTTGTAGGAATCAAC 1077
Query 1067 TATTATAC-TGCCACC-TTCGC-T-GCTT-AC-AATG-GACTCATTGATCCTTCA-AGAC 1118
||||| || | | | || || | || || || | | | || |||||||| | ||
Sbjct 1078 TATTACACAT-C-AGTGTTTGCATTGCACGACGAA-GAG-C-CA--GATCCTTCGCA-AC 1129
Query 1119 CAACTTGGGA-ATCTGACTCTCTTGTTAAGTGGGATCCCAAGAATATACTAGGATACAA- 1176
||| |||| | | ||| ||||| || | ||||| || ||| ||| | ||||| ||
Sbjct 1130 CAAGTTGGCAGAG-TGATTCTCTCGTGGACTGGGAACC-AAGG-TATG-T-GGATA-AAT 1183
Query 1177 -CA-T-CG---G-TAGCAAGCCTTTAACT-GCTTCACTCGCCGTTTATGCAAATGGATT- 1227
|| | | | || ||||||| | | ||| | | | || || ||||| || ||
Sbjct 1184 TCAATGCTTTTGCTAACAAGCCTG-ATGTTGCTAAAGTGGAAGTCTACGCAAAGGGTTTG 1242
Query 1228 ACGGGAACTTCT-GAAATATGTTAAGGATAAATACGGTGATCCAGAGATTATCATCGCAG 1286
| || | | ||| ||||||| | ||||| |||||||| |||| || || || ||| | |
Sbjct 1243 A-GG-AGCCTCTTGAAATATATCAAGGACAAATACGGCAATCCTGAAATCATGATCACCG 1300
Query 1287 AGAATGGATATGGAGAGAGTT-T-GG-GAGCTAATGATA-A-GC-TTCCCAATG-CACTG 1339
|||||||||| |||||| | | | || |||| || || | | || || | || | |||
Sbjct 1301 AGAATGGATACGGAGAG-GATCTAGGTGAGC-AA-GACACAAGCCTTGT-AGTGGCGCTG 1356
Query 1340 GCTGA-CTA-CAATAGAAAATATTACCA-CCAGAGGCATCTTTTAAGTCTAA-ATGAGGC 1395
| || | | || |||| ||| || | ||||| ||||| || || || | || ||
Sbjct 1357 TCAGATC-AGCAC-AGAACATACTAT-ATCCAGAAACATCTCTTGAG-CTTGCACGAAGC 1412
Query 1396 AATTTGTG-TGGATAAAGTAAATGTGACAGGATACTTTGCAT-GGTCATTGCTAGACAAT 1453
|||||| | || |||||||||| || ||||| || ||| ||| |||||||| | ||||||
Sbjct 1413 AATTTGCGATG-ATAAAGTAAACGTTACAGGGTATTTT-CATTGGTCATTGATGGACAAT 1470
Query 1454 TTCGAATGGCAAGATGGTTATGAAA-CGAGATACGGGCTGTATTACATCGACTACAAAAA 1512
|| |||||||||||||| || || |||||| ||||| || ||| |||| ||||||||
Sbjct 1471 TTTGAATGGCAAGATGGATAC-AAGGCGAGATTTGGGCTCTACTACGTCGATTACAAAAA 1529
Query 1513 TAATTTGACTCGTCACGAAAA 1533
||||||||| || ||||||||
Sbjct 1530 TAATTTGACGCGCCACGAAAA 1550
> AT2G44490.1 | Symbols: PEN2, BGLU26 | Glycosyl hydrolase superfamily
protein | chr2:18364756-18367725 FORWARD LENGTH=2009
Length=2009
Score = 137 bits (74), Expect = 3e-31
Identities = 205/266 (77%), Gaps = 18/266 (7%)
Strand=Plus/Plus
Query 296 GTTGATTTCTACCATCGTTACAAGGAAGATATTCAGTTATTGAAGAA-ACTAAACATGGA 354
||||||||||||||||||||||||||||||||| || | ||||| | | ||||||||||
Sbjct 321 GTTGATTTCTACCATCGTTACAAGGAAGATATTAAGAGAATGAAGGATA-TAAACATGGA 379
Query 355 --CGGTTTCAGATTCTCTTTTTCATGGCCCCGAATATTT-CCTCATGGAAGAAAGG-ATA 410
|| |||| | || || || | ||||| ||| | | | ||| |||| | ||||| |||
Sbjct 380 TTCG-TTTCGGCTT-TCCATTGCTTGGCCACGAGT-TCTACCTTATGGCA-AAAGGGATA 435
Query 411 -AGGGCGTTAGC-AAGGTGGG-TGTCAAGTTTTACCACGATCTTATAGACGAGCTTCTT- 466
||| ||||| ||| || | | ||||||||| | ||| |||| || || || |||
Sbjct 436 GAGGA-GTTAGTGAAGAAGGAAT-T-AAGTTTTACAATGATGTTATTGATGAACT-CTTA 491
Query 467 GCAAATGGTATAACTCCACTAGCAACGGTCTTCCATTGGGACATTCCTCAAGACCTAGAA 526
|| |||| || ||||| || | || |||| ||||||||||| || || || || |||
Sbjct 492 GCCAATGAAATCACTCCTCTTGTTACTATCTTTCATTGGGACATACCACAGGATCTTGAA 551
Query 527 GATGAATACGGCGGTTTTCTAAGCGA 552
||||||||||||||||||||||||||
Sbjct 552 GATGAATACGGCGGTTTTCTAAGCGA 577
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80923278540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5