BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941293
Length=886
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17770.1 | Symbols: ATCBR, CBR1, CBR | NADH:cytochrome B5 re... 1419 0.0
> AT5G17770.1 | Symbols: ATCBR, CBR1, CBR | NADH:cytochrome B5
reductase 1 | chr5:5864251-5866709 REVERSE LENGTH=1352
Length=1352
Score = 1419 bits (768), Expect = 0.0
Identities = 848/887 (96%), Gaps = 3/887 (0%)
Strand=Plus/Plus
Query 1 TTTCATTTGGGTT-A-CG-AGCCATGGATACCGAGTTTCTCCGAACCCTAGATCGCCAAA 57
||||||||||||| | | |||||||||||||||||||||||||||||||||||| || |
Sbjct 192 TTTCATTTGGGTTAAGAGAAGCCATGGATACCGAGTTTCTCCGAACCCTAGATCGTCAGA 251
Query 58 TTCTTTTGGGTGTCTTCGTCGCTTTCGTCGCCGCCGGTGCTGGTGCTGCTTATTTTCTTA 117
||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 252 TTCTTTTGGGTGTCTTCGTTGCTTTCGTCGCCGTTGGTGCTGGTGCTGCTTATTTTCTTA 311
Query 118 CATCCTCCAAGAAACGCAGAGTGTGCTTGGATCCAGAGAATTTCAAGGAGTTCAAGCTTG 177
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 312 CATCCTCCAAGAAACGCAGAGTGTGTTTGGATCCAGAGAATTTCAAGGAGTTCAAGCTTG 371
Query 178 TTAAGAAACATCAACTTAGTCACAATGTGGCCAAGTTCATTTTTGAACTCCCAACTTCTA 237
|||||| |||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 372 TTAAGAGACATCAGCTTAGTCACAATGTGGCCAAGTTCGTTTTTGAACTCCCAACTTCTA 431
Query 238 CCTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGGGGAAAGGATGGTCAAG 297
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 CTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGGGGAAAGGATGGTCAAG 491
Query 298 GAGAGGATGTTATTAAGCCATACACCCCGACTACCTTAGACTCAGACGTTGGACGTTTCG 357
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 492 GAGAGGATGTTATTAAGCCATACACCCCGACTACGTTAGACTCTGACGTTGGACGTTTCG 551
Query 358 AACTTGTCATTAAGATGTATCCGCAAGGAAGGATGTCTCATCATTTCAGGGAGATGCGTG 417
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 552 AACTTGTCATTAAGATGTATCCGCAAGGACGGATGTCTCATCATTTCAGGGAGATGCGTG 611
Query 418 TTGGAGACCATCTTGCCGTAAAGGGGCCTAAGGGTAGGTTCAAGTATCAACCAGGTCAGT 477
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 612 TTGGAGACCATCTTGCCGTAAAGGGACCAAAGGGTAGGTTCAAGTATCAACCAGGTCAGT 671
Query 478 TTAGGGCATTTGGAATGCTTGCTGGAGGTTCAGGCATCACTCCCATGTTCCAAGTCGCTA 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 672 TTAGGGCATTTGGAATGCTTGCTGGAGGTTCAGGCATCACTCCCATGTTCCAAGTGGCCA 731
Query 538 GAGCAATTCTAGAAAACCCAACAGATAAGACAAAGGTGCACCTCATTTACGCCAATGTCA 597
||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||
Sbjct 732 GAGCAATTCTAGAAAACCCAACAGACAAGACAAAGGTGCATCTCATTTACGCCAACGTCA 791
Query 598 CATACGAAGACATTCTCTTGAAGGAAGAATTGGAGGGTCTTACCGCCAATTACCCAGATC 657
||||||| ||||||||||||||||||||||||||||||||||| |||||||||| || |
Sbjct 792 CATACGACGACATTCTCTTGAAGGAAGAATTGGAGGGTCTTACTACCAATTACCCTGAAC 851
Query 658 AATTCAAAATCTACTATGTTTTGAACCAGCCTCCGGAAATATGGGATGGTGGTGTTGGAT 717
|||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 852 AATTTAAAATCTTCTATGTTTTGAACCAGCCTCCGGAAGTATGGGATGGTGGTGTTGGAT 911
Query 718 TTGTATCAAAGGAAATGATTCAGAGTCATTGCCCTGCACCGGCATCCGATATTCAGATCC 777
|||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||
Sbjct 912 TTGTATCAAAGGAAATGATTCAGACTCATTGCCCTGCACCTGCATCTGATATTCAGATCC 971
Query 778 TAAGATGCGGGCCACCGCCGATGAACAAGGCCATGGCTGCAAACCTTGAAGCTCTGGGAT 837
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 972 TAAGATGCGGACCACCGCCAATGAACAAGGCCATGGCTGCAAACCTTGAAGCTCTGGGAT 1031
Query 838 ACTCTCCGGAGATGCAATTTCAGTTCTGATCTGAATCTCTTCTTTTG 884
||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1032 ACTCTCCGGAGATGCAATTCCAGTTCTGATCTGAATATCTTCTTTTG 1078
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43251600567
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5