BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941307
Length=965
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17880.1 | Symbols: CSA1 | disease resistance protein (TIR-N... 861 0.0
> AT5G17880.1 | Symbols: CSA1 | disease resistance protein (TIR-NBS-LRR
class) | chr5:5908874-5913099 REVERSE LENGTH=3597
Length=3597
Score = 861 bits (466), Expect = 0.0
Identities = 595/654 (91%), Gaps = 21/654 (3%)
Strand=Plus/Plus
Query 322 AGTTCTGTTCCTGAGATTTTGTTCTGCACTAGCTTTCCGGGATGTGAAATGCCTTCATGG 381
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2866 AGTTGTGTTCCTGAGATTTTGTTCTGCACTAGCTTTCCTGGATGTGAAATGCCTTCATGG 2925
Query 382 TTTTCTCACGACGCAATTGGATCTATGGTGGAGTTCGAATTACCTCCTCACTGGAATCAC 441
||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2926 TTTAGTCACGATGCAATTGGATCTATGGTGGAGTTTGAATTACCTCCTCACTGGAATCAC 2985
Query 442 AATAGGCTTTCTGGGATAGCTCTTTGTGTTGTTGTCTCATTCCAA-AACTGTCAAAA-TC 499
|||||||||||||||||||| || ||||||||||||||||| ||| |||||| |||| ||
Sbjct 2986 AATAGGCTTTCTGGGATAGCCCTATGTGTTGTTGTCTCATT-CAAGAACTGT-AAAAGTC 3043
Query 500 ATGCCAACTTGACAGTCAAGTTCTCTTGTGAGCCAAAA-AATGGAGAGAGCTCTTGCACC 558
|||||||||||| ||||||||||||||||||| ||||| || |||||| |||||| || |
Sbjct 3044 ATGCCAACTTGATAGTCAAGTTCTCTTGTGAG-CAAAATAACGGAGAGGGCTCTTCCAGC 3102
Query 559 AGCATTACTTGGAAGGTTGGAAGTTTGATTGAACAAGACAACCAAGAAGAAACAGTTGAG 618
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3103 AGCATTACTTGGAAGGTTGGAAGTTTGATTGAACAAGACAACCAAGAAGAAACAGTTGAA 3162
Query 619 TCAGATCATGTCTTTATTGGCTACACCAACTGCTTAGATTTCATAAAGA-TTGTTGAAGG 677
|||||||||||||||||||||||||||||||||||||| |||||||| | ||||| ||||
Sbjct 3163 TCAGATCATGTCTTTATTGGCTACACCAACTGCTTAGACTTCATAAA-ACTTGTTAAAGG 3221
Query 678 CCAAGGTCCTCGTAAATGTGCTCCGACCAAGGCATCACTGGAGTTTAGTGTGACAACTGG 737
||||||| || |||||||||||||||||| ||||| || ||||||||||||| ||||||
Sbjct 3222 CCAAGGTGGTCCTAAATGTGCTCCGACCAAAGCATCCCTTGAGTTTAGTGTGAGAACTGG 3281
Query 738 TACTGGCGGGGAAGCTAGGTTTGAAGTTTTGAAATCCGGTTTCAGTTTTGTGTTTGAACC 797
|||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 3282 TACTGGTGGGGAAGCTACGCTTGAAGTTTTGAAATCCGGTTTCAGTTTTGTGTTTGAACC 3341
Query 798 TGAAGAGAACAGAGTTCCATTCCCAAGGAATGATGAAGTCAAAGGTAAA--A-----CAA 850
|||||||||||||||||||| ||||||||||||||| || ||||||||| | |||
Sbjct 3342 TGAAGAGAACAGAGTTCCATCCCCAAGGAATGATGATGTAAAAGGTAAAGTAAAAATCAA 3401
Query 851 -AAAA-T--AAC-GCTAATGGTTGTTTCAAGGATCAAGCAAAAGGTGATGAATATCCCAA 905
|||| | || ||||||||||||||||||||||||||||||||| |||||| ||| ||
Sbjct 3402 CAAAACTCCAAGTGCTAATGGTTGTTTCAAGGATCAAGCAAAAGGTAATGAATCTCCAAA 3461
Query 906 GGGCCAGTGGCAGACCTACATTGAAAGTTCTGGCAACTAACATCCCAGGTGAAG 959
||||||||||||||| |||||||||| ||| ||| ||||||||||| ||||||
Sbjct 3462 GGGCCAGTGGCAGACTTACATTGAAAACTCTAGCA-CTAACATCCCAAGTGAAG 3514
Score = 462 bits (250), Expect = 2e-129
Identities = 282/298 (95%), Gaps = 0/298 (0%)
Strand=Plus/Plus
Query 24 GATACTTTCAGTGCGTCGTTTATGCTTAAGCAAGAATGAAAAGATCAGCCGCCTTCCAGA 83
|||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2517 GATACTCTCCGTGCGTCGTTTATGCTTAAACAAGAATGAAAAGATCAGCCGCCTTCCAGA 2576
Query 84 TCTCATCAATAAATTTTCTCAACTGCAATGGCTTGATTTGAAGTATTGTAAGAATCTTAC 143
|||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 2577 TCTCCTCAATAAATTTTCTCAACTTCAATGGCTTCATTTGAAGTATTGTAAGAATCTTAC 2636
Query 144 ACATGTTCCTCAGCTTCCACCAAATCTTCAGTGTTTAAACGTACATGGTTGTTGCTCACT 203
||||||||| |||||||||||||||||||||| ||||||||| ||||||||| |||||||
Sbjct 2637 ACATGTTCCACAGCTTCCACCAAATCTTCAGTATTTAAACGTTCATGGTTGTAGCTCACT 2696
Query 204 GAAGACAGTTGCAAAACCACTGGTATGTTCTATACCGATGAAGCATATCAGTTCCACGTT 263
|||||||||||||||||| ||||||||||||||||||||||||||| ||| |||| ||||
Sbjct 2697 GAAGACAGTTGCAAAACCGCTGGTATGTTCTATACCGATGAAGCATGTCAATTCCTCGTT 2756
Query 264 CATTTTTACTAACTGCAATGAATTGGAACAAGCTGCAAAGGAGGAAATTGTAGCATAT 321
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2757 CATTTTCACTAACTGCAATGAATTGGAACAAGCTGCAAAGGAGGAAATTGTAGTATAT 2814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47220098180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5