BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941312
Length=3204
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17980.1 | Symbols: | C2 calcium/lipid-binding plant phosph... 4451 0.0
> AT5G17980.1 | Symbols: | C2 calcium/lipid-binding plant phosphoribosyltransferase
family protein | chr5:5953596-5956745
FORWARD LENGTH=3150
Length=3150
Score = 4451 bits (2410), Expect = 0.0
Identities = 2925/3173 (92%), Gaps = 38/3173 (1%)
Strand=Plus/Plus
Query 22 ATGGCAACAACTCGGAAGTTGGTCGTAGAAGTAGTAGACGCAAAGGATCTTACACCAAAA 81
||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAACAACCCGGAAACTGGTAGTAGAAGTAGTAGACGCAAAGGATCTTACACCAAAA 60
Query 82 GACGGCCATGGAACGTCAAGCCCGTACGTTATTGTCGACTATTACGGCCAAAGACGACGA 141
||||| |||||||||||||| ||||||||| | |||||||||||||||||||| ||||
Sbjct 61 GACGGTCATGGAACGTCAAGTCCGTACGTTGTCCTCGACTATTACGGCCAAAGAAGACGG 120
Query 142 ACACGAACCATAGTCCGTGACTTAAACCCTGTTTGGAACGAGACACTCGAGTTCAGTCTT 201
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACACGAACCATAGTACGTGACTTAAACCCTGTTTGGAACGAGACACTCGAGTTCAGTCTC 180
Query 202 GCGAAGCGACCTTCTCATCAGCTCTTTGCCGATGTTCTTGAGCTTGACATGTACCATGAC 261
|| |||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 181 GCAAAGCGACCATCTCATCAGCTCTTTACCGATGTTCTTGAGCTCGACATGTACCATGAC 240
Query 262 AAGAACTTTGGTCAAACACGGAGGAACAATTTTCTCGGTAGGATCCGACTTGGGCCCGAT 321
||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| |||||
Sbjct 241 AAGAACTTTGGACAAACCCGGAGGAACAATTTTCTTGGTAGGATCCGACTTGGGTCCGAT 300
Query 322 CAGTTTGTTGGTAAAGGAGAAGAGGCTTTGATATATTATCCTTTGGAGAAGAAGAGTTTG 381
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CAGTTTGTTGGTCAAGGAGAAGAGGCTTTGATATATTATCCTTTGGAGAAGAAGAGTTTG 360
Query 382 TTTAATCTTGTGCAAGGTGAGATTGGTCTTAGGGTTTACTACGCCGATGAAAAGCCTCCT 441
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 TTTAATCTTGTACAAGGTGAGATTGGGCTTAGGGTTTACTACGCCGATGAAAAGCCTCCT 420
Query 442 CCTTTGAAACCGACGGTAGCTCCTCTTGAGACGGTGGTGGAGGAAAAGACGGAGGAGACG 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CCTTTGAAACCGACGGTAGCTCCTCTTGAGACGGTGGTGGAGGAAAAGACGGAGGAGACG 480
Query 502 ACGGCAGACGGTCCAGACAAGTCTCAGCCACCACCAGAGACTAATGATGA-TCCTGCTGA 560
| ||| || ||||||||| ||||| |||||||||||||||||||||| | |||||||||
Sbjct 481 AAGGCGGAAGGTCCAGACGAGTCTAAGCCACCACCAGAGACTAATGA-CATTCCTGCTGA 539
Query 561 AGTTAAAGAAACCCCGGAACCACCTCAACCGCCACCGGAGGAGAATTCGCCAGCCGAGGG 620
||| ||||||||| | ||||||| ||||| ||||||||||||| ||| |||||||||||
Sbjct 540 AGTGAAAGAAACCGTGAAACCACCACAACCACCACCGGAGGAGAGTTCACCAGCCGAGGG 599
Query 621 TCTCAAGCCAAACGAGGAAGCCTCACCACCGTTACAAGAAAATGCTACGGTTGGTGGAGA 680
|| ||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 600 TCCCAAGCCAGACGAGGAAGCCTCACCACCTTTACAAGAAAACGCTACGGTTGGTGGAGA 659
Query 681 AGAACCAGCGGCGTCGGAACCAACTCTGCCACCGGAATCAGATAAGAATGAAGCAGACGT 740
||||||| | ||| | | ||||||||||||||||||||||||| |
Sbjct 660 AGAACCA----C--CGG--------C-G---TCGGAATCAGATAAGAATGAAGCAGAGGC 701
Query 741 GAAACCGGTGGAAGAGCCACCGCAGAACCAACCAGACGGTGAAGATGTTGTACTTGAGTC 800
|||||| ||||| |||||||||||||| |||||||| ||||||||| |||| ||||||||
Sbjct 702 GAAACCCGTGGAGGAGCCACCGCAGAATCAACCAGATGGTGAAGATATTGTGCTTGAGTC 761
Query 801 AGAAGATTCAATGAGCTGGGCTTCGGCGCCGCGAT---C---ACCGGAAGTTATCATTTC 854
||||||| ||||||| ||||||||||||||||||| | ||||||||||||||||||
Sbjct 762 AGAAGATACAATGAGTTGGGCTTCGGCGCCGCGATCACCGTTACCGGAAGTTATCATTTC 821
Query 855 AAGATCTGTCTCCGGTTCCATACCAGAAATCAAAAACGGACCACAACCACTACGGAGAAG 914
||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 822 AAGATCTGTATCCGGTTCCATACCCGAAACCAAAAACGGACCACAACCACTACGGAGAAG 881
Query 915 CGTATCGGAAACAGCCAGCTACACATCAGAGATCTCCGACGTGTCAACGATAGAACGATC 974
|||||||||||| || |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 882 CGTATCGGAAACTGCAAGCTACACATCAGAGATCTCCGACGTATCAACGATCGAACGATC 941
Query 975 CACGTTTGATTTGGTGGAGAAAATGCATTACGTCTTCGTCCGCGTCGTGAAAGCTCGGTC 1034
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 942 CACGTTTGATTTGGTGGAGAAGATGCATTACGTCTTCATCCGCGTCGTGAAAGCTCGGTC 1001
Query 1035 TTTACCAACCTCCGGAAGTCCAGTCACAAAGATCTCACTCTCCGGCACAATGATCCAATC 1094
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1002 TTTACCAACCTCCGGGAGTCCAGTCACAAAGATCTCACTCTCCGGCACAATGATTCAATC 1061
Query 1095 AAAACCCGCCAGAAAAACCTCTTGCTTCGAGTGGGATCAAACCTTTGCCTTCCTCCGTGA 1154
|||||| || |||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 1062 AAAACCGGCTAGAAAAACCTCTTGCTTCGAGTGGGATCAAACGTTCGCCTTCCTCCGTGA 1121
Query 1155 CTCACCGGATTTATCTTCTTCTCCAATTCTAGAGATCTCCGTGTGGGATTCATCGACGGA 1214
|||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1122 CTCACCGGATTTATCTTCCTCTCCAATTCTGGAGATATCCGTGTGGGATTCATCGACGGG 1181
Query 1215 AATCGAAACTAGCCAATTCCTCGGTGGAATTTGCTTTGACGTGTCAGAGATTCCGCTCCG 1274
||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1182 AATCGAAACCAGCCAATTCCTTGGTGGAATTTGCTTCGACGTGTCAGAGATTCCGCTCCG 1241
Query 1275 AGATCCACCGGATAGTCCATTAGCACCGCAATGGTACCGTCTCGAAGGAGGTGGAGCTCA 1334
||| || ||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1242 AGACCCGCCGGATAGTCCATTAGCGCCGCAATGGTACCGTCTCGAAGGTGGTGGAGCTCA 1301
Query 1335 CAACAGTGATCTAATGCTGGCCACGTGGACAGGAACTCAAGCAGACGAATCATTTCCCGA 1394
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1302 CAACAGTGATCTAATGCTTGCCACGTGGACAGGAACTCAAGCAGACGAATCATTCCCCGA 1361
Query 1395 CGCTTGGAAAACAGATACCGCCGGAAACGTAACCGCTCGAGCGAAAGTTTACATGTCGTC 1454
||| |||||||| ||||| ||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 1362 CGCGTGGAAAACTGATACAGCCGGAAACGTGACCGCACGAGCGAAGGTTTACATGTCGTC 1421
Query 1455 GAAGCTGTGGTATCTACGCGCCACCGTAATCGAAGCTCAAGACTTGTTACCGCCACAGTT 1514
||||||||||||||||||||| ||||| || ||||| ||||||||||||||||| |||||
Sbjct 1422 GAAGCTGTGGTATCTACGCGCTACCGTGATAGAAGCACAAGACTTGTTACCGCCTCAGTT 1481
Query 1515 AACGGCGTTTAAAGAAGCGTCGTTTCAATTAAAAGCTCAGCTAGGTTTCCAAGTGCAGAA 1574
|||||||||||| |||||||| ||||| |||||||||||| |||||| |||||| |||||
Sbjct 1482 AACGGCGTTTAAGGAAGCGTCATTTCAGTTAAAAGCTCAGTTAGGTTCCCAAGTTCAGAA 1541
Query 1575 AACCAAATCCGCCGTTACTCGTAATGGCGCGCCGTCATGGAACGAAGATCTACTCTTCGT 1634
|||||||||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 1542 AACCAAATCCGCCGTTACTCGTAACGGAGCTCCGTCATGGAACGAAGATCTACTCTTCGT 1601
Query 1635 AGCCGCCGAGCCTTTCTCCGATCAGCTAGTTTTCACACTGGAGTATCGAACATCGAAAGG 1694
||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 1602 AGCCGCCGAACCTTTCTCCGATCAGCTTGTTTTCACGTTGGAGTATCGAACATCGAAAGG 1661
Query 1695 GCCAGTCACCGTCGGTATGGCGCGCGTGCCTCTCA-CTTCAATCGAGAGACGCGTCGATG 1753
|||||||||||||| ||||| |||||||| |||| | ||||||||||||||||||| |
Sbjct 1662 ACCAGTCACCGTCGGAATGGCTCGCGTGCCACTCAGC-GCAATCGAGAGACGCGTCGACG 1720
Query 1754 ATCGTTTGGTGGCTTCGAGATGGTTCGGATTCGAAGATCCAAACGACGAGAAAAGAGGAA 1813
|||| ||||| |||||||||||||| ||||| |||||||||||||||||||| |||||||
Sbjct 1721 ATCGCTTGGTTGCTTCGAGATGGTTAGGATTGGAAGATCCAAACGACGAGAAGAGAGGAA 1780
Query 1814 ACAGATCTAGAG-T-ACATCTGAGACTCTGTTTCGACGGTGGTTATCACGTGATGGACGA 1871
|||||||||||| | |||| | || || || |||||||| ||||||||||||||||||||
Sbjct 1781 ACAGATCTAGAGTTCACAT-T-AGGCTTTGCTTCGACGGAGGTTATCACGTGATGGACGA 1838
Query 1872 GGCGGTACACGTGTGCAGCGATTACCGGCCTACGGCGAGGCAGTTATGGAAACCGGCGGT 1931
||||| ||||||||||| |||||||| |||||||||||||||||||||||||| |||||
Sbjct 1839 GGCGGCGCACGTGTGCAGTGATTACCGACCTACGGCGAGGCAGTTATGGAAACCAGCGGT 1898
Query 1932 AGGAATCGTCGAGCTCGGTATAATCGGTTGCAAGAATCTGTTACCGATGAAGACGGTGAA 1991
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 1899 GGGAATCGTCGAGCTCGGTATAATCGGTTGCAAAAATCTATTACCGATGAAGACGGTTAA 1958
Query 1992 CGGAAAAGGTTCCACGGATGCGTACACGGTGGCGAAATACGGTACTAAATGGGTCCGTAC 2051
||||||||| || ||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1959 CGGAAAAGGATCAACGGACGCGTACACGGTGGCGAAATACGGTTCTAAATGGGTCCGTAC 2018
Query 2052 CCGAACCGTATCGGATTCTTTAGATCCGAAATGGAACGAACAGTACACGTGGAAAGTATA 2111
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2019 CCGAACCGTGTCGGATTCTTTAGATCCGAAATGGAACGAACAGTACACGTGGAAAGTATA 2078
Query 2112 CGATCCGTGTACGGTTTTGACGATTGGAGTCTTCGATAGCTGGGGAGTATTCGAAATCAA 2171
||||||||||||||||||||| || ||||||||||||||||||||||||| |||| || |
Sbjct 2079 CGATCCGTGTACGGTTTTGACTATAGGAGTCTTCGATAGCTGGGGAGTATACGAAGTCGA 2138
Query 2172 CAGTGGAAAAGAAGCCACGCGTCAGGATCTCCGTATCGGGAAAGTTCGTATACGTATATC 2231
| |||||||||||||||||||||| ||||| | || || ||||| ||||||||||||||
Sbjct 2139 CGGTGGAAAAGAAGCCACGCGTCAAGATCTAAGAATTGGAAAAGTACGTATACGTATATC 2198
Query 2232 TACGCTGGAGACTGGTAAAGCGTATAGAAATACGTATCCGCTT-CTGATGTTAGTTAACG 2290
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 2199 GACGCTGGAGACTGGTAAAGCGTATAGAAATACGTATCCG-TTACTGATGTTAGTTAACG 2257
Query 2291 GCGGTGTTAAAAAACTGGGAGAGATAGAATTGGCCGTTAGATTCGTGAGATCAGCTCCAC 2350
|||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2258 GCGGCGTTAAAAAATTGGGAGAGATAGAATTGGCCGTTAGATTCGTGAGAACAGCTCCAC 2317
Query 2351 CGTTGGATTTCTTACACGTGTATACTCAACCGTTATTGCCTTTGATGCATCACATTAAAC 2410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2318 CGTTGGATTTCTTACACGTGTATACTCAACCGTTATTGCCTTTGATGCATCACATTAAAC 2377
Query 2411 CGTTGAGTTTGATTCAAGAAGAGATGTTGAGGAACGCTGCCGTGAGGATCTTGGCTGCCC 2470
||||||||||| |||||||||| |||||||||||| |||| |||| ||||||||| || |
Sbjct 2378 CGTTGAGTTTGTTTCAAGAAGATATGTTGAGGAACACTGCAGTGAAGATCTTGGCCGCAC 2437
Query 2471 ATTTGTCACGATCTGAGCCGCCTTTAAGGCCGGAGATCGTACGGTACATGCTCGACGCCG 2530
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 2438 ATTTGTCACGATCTGAGCCGCCTTTAAGGCCGGAGATAGTACGGTATATGCTCGACGCCG 2497
Query 2531 ATTCTCACACTTTCAGTATGCGTAAAGTCCGAGCAAATTGGCTCCGCATTGTTAACGTGG 2590
|| |||| ||||||||||||||||||||| ||||||||||||| || || || || || |
Sbjct 2498 ATACTCATACTTTCAGTATGCGTAAAGTCAGAGCAAATTGGCTTCGGATAGTGAATGTAG 2557
Query 2591 TCGCCGGAATGGTCGACATAGTGCGGTGGGTGGATGACACACGTTTCTGGAAGAATCCGA 2650
||||||||||||||||| | ||||||||||| |||||||| |||||||||||||||||||
Sbjct 2558 TCGCCGGAATGGTCGACGTGGTGCGGTGGGTTGATGACACCCGTTTCTGGAAGAATCCGA 2617
Query 2651 CATCTACTTTACTAGTTCACGCTCTTGTCGTGATGCTGATATGGTTCCCTGATCTCATTG 2710
|||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||| || |
Sbjct 2618 CATCAACTTTACTAGTTCACGCACTTGTCGTGATGCTGATTTGGTTCCCGGATCTTATCG 2677
Query 2711 TTCCCACATTAGCGTTTTACTTGTTCGTGATCGGCGCGTGGAATTACAGATTCAGGTCAC 2770
| || |||||||||||||||||||||||||| || ||||||||||| || ||||||||||
Sbjct 2678 TACCGACATTAGCGTTTTACTTGTTCGTGATTGGTGCGTGGAATTATAGGTTCAGGTCAC 2737
Query 2771 GTGCTGCTCTTCCTCACTTT-GATCCAAGACTCTCGTTGGCTGATGCAGCCGATAGAGAA 2829
|||||||||| || || ||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct 2738 GTGCTGCTCTACCACA-TTTCGATCCAAGACTCTCGTTAGCTGATGCAGCTGATAGAGAC 2796
Query 2830 GAGCTTGACGAGGAGTTTGACGTCGTCCCGAGCAACCGGCCGCCGGAGATGGTTCGGTTG 2889
||||| |||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 2797 GAGCTCGACGAGGAGTTTGACGTCGTACCGAGCAACCGACCACCGGAGATGGTTCGGTTG 2856
Query 2890 AGGTACGATAAGCTACGAAATGTCGGAGCTCGAGTTCAGACGATTCTTGGTGAAGTAGC- 2948
|||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||| ||
Sbjct 2857 AGGTACGATAAGCTACGAAACGTCGGAGCTAGAGTTCAAACGATTCTTGGTGAAGTGGCT 2916
Query 2949 GTCTCAAGGAGAGAAAATGCAAGCTTTGGTGACGTGGCGAGACCCACGAGCGACGGGTAT 3008
| | ||||| ||||| ||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 2917 G-CGCAAGGGGAGAAGATGCAAGCTTTGGTGACGTGGCGTGACCCACGAGCGACTGGTAT 2975
Query 3009 ATTCGTGGGGCTGTGTTTATTTGTGGCGTTGGTGTTGTATCTTGTGCCGACGAAGATGGT 3068
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2976 ATTCGTGGGGCTGTGTTTCTTTGTGGCGTTGGTGTTGTATCTTGTGCCGACGAAGATGGT 3035
Query 3069 GGCTATGGCGTCAGGGTTTTATTACTTCCGGCATCCTATATTCCGTGACCGGAAACCTTC 3128
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 3036 GGCTATGGCGTCAGGGTTTTATTACTTCCGGCATCCTATTTTCCGTGATCGGAAACCTTC 3095
Query 3129 GCCGGTGTTAAACTTCTTCCGGCGACTACCTTCGTTATCTGATCGGCTCATGT 3181
||||||||||| ||||||||||||||||| || |||||||||||||||||||
Sbjct 3096 TCCGGTGTTAAATTTCTTCCGGCGACTACCATCATTATCTGATCGGCTCATGT 3148
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 159380377911
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5