BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941313
Length=1377
Score E
Sequences producing significant alignments: (Bits) Value
AT5G17990.1 | Symbols: TRP1, pat1 | tryptophan biosynthesis 1 |... 2242 0.0
> AT5G17990.1 | Symbols: TRP1, pat1 | tryptophan biosynthesis 1
| chr5:5957213-5959905 FORWARD LENGTH=1676
Length=1676
Score = 2242 bits (1214), Expect = 0.0
Identities = 1323/1376 (96%), Gaps = 5/1376 (0%)
Strand=Plus/Plus
Query 5 TGGTTAAGTAATCGAGCGATGGTTATTGCGGTGGCGGCAACGAGCTCCATAGTTTCCGGA 64
||||| || ||||||| ||||||||||||||||||| | ||||||||||| |||||||||
Sbjct 100 TGGTTGAGCAATCGAGTGATGGTTATTGCGGTGGCGACGACGAGCTCCATTGTTTCCGGA 159
Query 65 ATCAAGCTTTCAGGGATCTTAACTTCTTTCAACGCCGTAGATGATGCGTCCAGTAGTTGC 124
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 160 ATCAAGCTTTCAGGGATCTTAACTTCGTTCAACGCCGTAGATGATGCGTCCAGTAGTTGC 219
Query 125 GGAAGAACCAACTTGACCGGAGTTAGAATTTTTCCGACATTGAGTCGGCGACGATTCTCA 184
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 GGAAGAAGCAACTTGACCGGAGTTAGAATTTTTCCGACATTGAGTCGGCGACGATTCTCA 279
Query 185 TCGATCGGAGCT-TTGTCCCCAATTAGTGGGCATGCCCAATCTTCCTTTAGTCGCAGCTC 243
|||||||||||| || ||||||||| ||||| |||| |||||||||||||||||||||||
Sbjct 280 TCGATCGGAGCTGTT-TCCCCAATTCGTGGGGATGCTCAATCTTCCTTTAGTCGCAGCTC 338
Query 244 TTTCGCTTTCCCTCAGAATCTCGGTTTGAGCGGTGGTTTTAGTGCAGCTGAAGCTCTGCC 303
|||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 339 TTTCGCTTGCTCTCAGAATCTCGGTTTGAGCGGTGGATTTAGTGCAGCTGAAGCTCTGCC 398
Query 304 ACCTGCTTGTGAAAATGCCAGCCCTCCTTCCATCAAATCTTTCAACCAGTTGATTGAAAC 363
||||||||||| |||||| |||||| ||||||| ||||||||||||||||||||||||||
Sbjct 399 ACCTGCTTGTGCAAATGCTAGCCCTTCTTCCATTAAATCTTTCAACCAGTTGATTGAAAC 458
Query 364 TTTGATTGATCGGGTTGATCTATCTGAATCCGAGGCTGAATCATCTCTTGAGTTTTTGCT 423
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 459 CTTGATTGATCGGGTTGATCTATCTGAAACTGAGGCTGAATCATCTCTTGAGTTTTTGCT 518
Query 424 GAACGAGGCAAACGAGGCGCTGATTAGTGCCTTTCTAGTT-TTGCTGAGAGCTAAAGGAG 482
||| |||||||||||||||||||| ||||||||||||||| || ||||||||||||||||
Sbjct 519 GAATGAGGCAAACGAGGCGCTGATCAGTGCCTTTCTAGTTCTT-CTGAGAGCTAAAGGAG 577
Query 483 AGACATATGAAGAAATTGTGGGGTTGGCTAGGGCAATGATGAAGCATGCCAGGAAAGTGG 542
||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 578 AGACATACGAAGAGATTGTGGGGTTAGCTAGGGCAATGATGAAGCATGCCAGGAAAGTGG 637
Query 543 AAGGACTAGTTGATGCTGTGGACATAGTTGGAACAGGTGGTGATGGAGCAAACACAGTCA 602
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 AAGGATTAGTTGATGCTGTGGACATAGTTGGAACAGGTGGTGATGGAGCAAACACAGTCA 697
Query 603 ATATATCAACTGGATCTTCAATACTTGCTGCAGCTTGTGGTGCAAAAGTAGCAAAGCAAG 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 ATATATCAACTGGATCTTCAATACTTGCTGCAGCTTGTGGTGCAAAAGTAGCAAAGCAAG 757
Query 663 GGAATCGTTCGAGTTCTTCTGCTTGTGGAAGTGCTGATGTACTAGAGGCACTAGGAGTGG 722
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 GGAATCGTTCAAGTTCTTCTGCTTGTGGAAGTGCTGATGTACTAGAGGCACTAGGAGTGG 817
Query 723 TGCTGGACTTGGGACCAGAGGGCATTAAAAGATGTGTTGAAGAAGGAGGGATCGGTTTTA 782
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 818 TTCTGGACTTGGGACCAGAGGGCATTAAAAGATGTGTTGAAGAAGGGGGGATCGGTTTTA 877
Query 783 TGATGTCACCAATGTATCATCCAGCTATGAAGATCGTTGGCCCTGTCCGGAAAAAGCTTA 842
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 878 TGATGTCACCAATGTATCATCCAGCTATGAAGATCGTTGGTCCTGTTCGGAAAAAGCTTA 937
Query 843 AAATAAAAACTGTTTTTAACATATTGGGACCTATGCTTAATCCTGCTAGAGTGTCTTATG 902
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 938 AAATTAAAACTGTTTTTAACATATTGGGACCTATGCTTAATCCTGCTAGAGTTTCTTATG 997
Query 903 CTGTCGTTGGTGTATACCACAAAAATCTGGTTGTTAAGATGGCAAAGGCACTGCAACGAT 962
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 998 CTGTCGTTGGTGTATACCACAAAGATCTGGTTGTTAAGATGGCAAAGGCACTGCAACGAT 1057
Query 963 TTGGAATGAAAAGAGCACTGGTGGTTCATTCATATGGTCTAGACGAAATGAGTCCGTTAG 1022
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1058 TTGGAATGAAAAGAGCACTGGTGGTTCATTCATGTGGTCTAGACGAAATGAGTCCGTTAG 1117
Query 1023 GAGGAGGACTAGTTTATGATGTAACCCCGGAAAAGATCGAAGAATTCTCATTCGACCCAT 1082
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1118 GAGGAGGACTAGTTTATGATGTAACTCCGGAAAAGATCGAAGAATTCTCATTCGACCCAT 1177
Query 1083 TGGACTTTGGTATTCCTCGTTGTACTCTTGAGGATTTGCGAGGTGGAGATCCAGACTACA 1142
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1178 TGGACTTTGGTATTCCTCGTTGTACTCTTGAGGATTTGCGAGGTGGAGGTCCAGACTACA 1237
Query 1143 ATGCGGATGTGTTAAGGCGTGTGCTTTCAGGGGAAAGTGGAGCAATTGCAGATTCACTGA 1202
||||||||||| |||| |||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1238 ATGCGGATGTGCTAAGACGTGTGCTTTCAGGGGAAAGTGGAGCAATTGCGGATTCATTGA 1297
Query 1203 TCCTAAACGCAGCTGCAGCTCTTCTGGTTAGCAACCGAGTTCAAACTCTAGCTGAAGGAG 1262
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1298 TCCTAAACGCAGCTGCAGCTCTTCTGGTTAGCAACCGAGTTCAAACGCTAGCTGAAGGAG 1357
Query 1263 TAACCTTGGCACGTGAAGTACAATCGTCAGGGAAAGCTATCAAGACCCTTGATTCATGGA 1322
||||| |||||||||||||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct 1358 TAACCGTGGCACGTGAAGTACAATCGTCTGGGAAAGCTATCAAGACGCTTGATTCTTGGA 1417
Query 1323 TAAACATCTCGAACTTAGCTCAGAAATCTCAGTGACCAGA-GAGGCTTATGATATT 1377
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1418 TAAACATCTCAAACTTAGCTCAGAAATCTCAGTGACCAGAAGAGGCTTATGATATT 1473
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67820936295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5