BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941320
Length=314
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18020.1 | Symbols: | SAUR-like auxin-responsive protein fa... 418 2e-116
AT5G18010.1 | Symbols: | SAUR-like auxin-responsive protein fa... 416 6e-116
AT5G18080.1 | Symbols: | SAUR-like auxin-responsive protein fa... 388 1e-107
AT5G18060.1 | Symbols: | SAUR-like auxin-responsive protein fa... 385 2e-106
AT5G18050.1 | Symbols: | SAUR-like auxin-responsive protein fa... 379 7e-105
AT5G18030.1 | Symbols: | SAUR-like auxin-responsive protein fa... 370 4e-102
AT3G03840.1 | Symbols: | SAUR-like auxin-responsive protein fa... 224 4e-58
AT4G38825.1 | Symbols: | SAUR-like auxin-responsive protein fa... 174 4e-43
AT4G38820.1 | Symbols: | unknown protein; Has 4 Blast hits to ... 174 4e-43
AT3G03820.1 | Symbols: | SAUR-like auxin-responsive protein fa... 158 4e-38
> AT5G18020.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr5:5966183-5966677 REVERSE LENGTH=495
Length=495
Score = 418 bits (226), Expect = 2e-116
Identities = 288/317 (91%), Gaps = 7/317 (2%)
Strand=Plus/Plus
Query 3 TTC-AAACCAAAAATAA-A-AGATGGCTTTTGTGAGAAGTCTTTTGGGAGCAAAGAAGAT 59
||| ||| |||||| || | | |||||||||||||||||||| |||||||||||||||||
Sbjct 77 TTCGAAA-CAAAAACAATAGATATGGCTTTTGTGAGAAGTCTATTGGGAGCAAAGAAGAT 135
Query 60 TCTAAGCCGCTCCACCGCAGCAGCCTCAGCGGCACCAAAAGGGTTTCTTGCAGTGTACGT 119
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 136 TCTAAGCCGCTCCACCACAGCAGCCTCGGCGGCACCAAAAGGGTTTCTTGCAGTGTACGT 195
Query 120 AGGAGAGAGCCTGAAGAAGAGATATTTGGTGCCAATCTCATATTTAAACCAACCCTCGTT 179
||| ||||||| |||||||||||| ||||||||||||||||||||||||| || || ||
Sbjct 196 AGGTGAGAGCCAAAAGAAGAGATATCTGGTGCCAATCTCATATTTAAACCAGCCTTCATT 255
Query 180 CCAAGCTCTGCTCAGTAAATCCGAGGAAGAGTTTGGGTTCGATCATCCGATGGGTGGCTT 239
|||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 256 TCAAGCTCTTCTCAGTAAATCCGAGGAAGAGTTTGGATTCGATCATCCAATGGGTGGCTT 315
Query 240 AACGATTCCTTGTCCTGAAGATACCTTCATCAATGTGACTTCTCGGCTCCAATGAT--TG 297
|||||| || |||||||||||||| ||||||||||||||||||||| ||||| ||| ||
Sbjct 316 AACGATCCCCTGTCCTGAAGATACATTCATCAATGTGACTTCTCGGTTCCAACGATGATG 375
Query 298 ATCCAACAttttt-ttC 313
| ||||||||||| |||
Sbjct 376 AGCCAACATTTTTCTTC 392
> AT5G18010.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr5:5962897-5963405 REVERSE LENGTH=509
Length=509
Score = 416 bits (225), Expect = 6e-116
Identities = 277/302 (92%), Gaps = 3/302 (1%)
Strand=Plus/Plus
Query 12 AAAATAAAAGATGGCTTTTGTGAGAAGTCTTTTGGGAGCAAAGAAGATTCTAAGCCGCTC 71
||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 92 AAAATAAAA-ATGGCTTTCGTGAGAAGTCTATTGGGAGCAAAGAAGATTCTAAGCCGCTC 150
Query 72 CACCGCAGCAGCCTCAGCGGCACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGAGCCT 131
||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 151 CACCGCAGCAGGATCTGCGGCACCAAAAGGGTTTCTTGCGGTGTACGTAGGAGAGAGCCA 210
Query 132 GAAGAAGAGATATTTGGTGCCAATCTCATATTTAAACCAACCCTCGTTCCAAGCTCTGCT 191
||||||||||||||||||||| ||||||| || | |||||| || || |||||||||||
Sbjct 211 GAAGAAGAGATATTTGGTGCCGCTCTCATACTTGAGCCAACCGTCATTTCAAGCTCTGCT 270
Query 192 CAGTAAATCCGAGGAAGAGTTTGGGTTCGATCATCCGATGGGTGGCTTAACGATTCCTTG 251
|||||||||||| |||||||||||||| | |||||||||||||||||||||||| |||||
Sbjct 271 CAGTAAATCCGAAGAAGAGTTTGGGTTTGCTCATCCGATGGGTGGCTTAACGATCCCTTG 330
Query 252 TCCTGAAGATACCTTCATCAATGTGACTTCTCGGCTCCAATGAT--TGATCCAACAtttt 309
||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 331 TCCCGAAGATACTTTCATCAATGTGACTTCTCGGCTCCAATGAAGATGATCCAACATTTT 390
Query 310 tt 311
||
Sbjct 391 TT 392
> AT5G18080.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr5:5983840-5984112 FORWARD LENGTH=273
Length=273
Score = 388 bits (210), Expect = 1e-107
Identities = 252/273 (92%), Gaps = 0/273 (0%)
Strand=Plus/Plus
Query 22 ATGGCTTTTGTGAGAAGTCTTTTGGGAGCAAAGAAGATTCTAAGCCGCTCCACCGCAGCA 81
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1 ATGGCTTTCGTGAGAAGTCTATTGGGAGCAAAGAAGATTCTAAGCCGCTCCACCGGAGCA 60
Query 82 GCCTCAGCGGCACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGAGCCTGAAGAAGAGA 141
| || ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 61 GGATCTGCGGCACCAAAAGGGTTTCTTGCGGTGTACGTAGGAGAGAGCCAGAAGAAGAGA 120
Query 142 TATTTGGTGCCAATCTCATATTTAAACCAACCCTCGTTCCAAGCTCTGCTCAGTAAATCC 201
||||||||||| |||||||||||||||| || || || |||||||| ||||||||||||
Sbjct 121 TATTTGGTGCCTGTCTCATATTTAAACCAGCCTTCATTTCAAGCTCTTCTCAGTAAATCC 180
Query 202 GAGGAAGAGTTTGGGTTCGATCATCCGATGGGTGGCTTAACGATTCCTTGTCCTGAAGAT 261
|| ||||||||||| || |||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 181 GAAGAAGAGTTTGGATTTGATCATCCGATGGGAGGCTTAACGATCCCTTGTCCCGAAGAT 240
Query 262 ACCTTCATCAATGTGACTTCTCGGCTCCAATGA 294
|||||||||||||||||||||||||||||||||
Sbjct 241 ACCTTCATCAATGTGACTTCTCGGCTCCAATGA 273
> AT5G18060.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr5:5975954-5976496 FORWARD LENGTH=543
Length=543
Score = 385 bits (208), Expect = 2e-106
Identities = 262/288 (91%), Gaps = 4/288 (1%)
Strand=Plus/Plus
Query 22 ATGGCTTTTGTGAGAAGTCTTTTGGGAGCAAAGAAGATTCTAAGCCGCTCCACCGCAGCA 81
|||||||| ||||||||||| |||| |||||||||||||| ||||||||| ||||||||
Sbjct 77 ATGGCTTTGGTGAGAAGTCTATTGGTTGCAAAGAAGATTCTTAGCCGCTCCGCCGCAGCA 136
Query 82 GCCTCAGCGGCACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGAGCCTGAAGAAGAGA 141
| ||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 137 GTCTCGGCGCCACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGAGCCAGAAGAAGAGA 196
Query 142 TATTTGGTGCCAATCTCATATTTAAACCAACCCTCGTTCCAAGCTCTGCTCAGTAAATCC 201
||||| |||||| ||||||| || ||||| || || || |||||||||||||||||||||
Sbjct 197 TATTTAGTGCCACTCTCATACTTGAACCAGCCTTCTTTTCAAGCTCTGCTCAGTAAATCC 256
Query 202 GAGGAAGAGTTTGGGTTCGATCATCCGATGGGTGGCTTAACGATTCCTTGTCCTGAAGAT 261
|| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 257 GAAGAAGAGTTTGGGTTCGATCATCCGATGGGTGGCTTAACGATCCCTTGTCCCGAAGAT 316
Query 262 ACCTTCATCAATGTGACTTCTCGGCTCCA---ATGATTGATCCAACAt 306
|| |||||||||||||||||||||||||| |||||| |||||||||
Sbjct 317 ACTTTCATCAATGTGACTTCTCGGCTCCATTGATGATT-ATCCAACAT 363
> AT5G18050.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr5:5974567-5975054 REVERSE LENGTH=488
Length=488
Score = 379 bits (205), Expect = 7e-105
Identities = 265/294 (90%), Gaps = 3/294 (1%)
Strand=Plus/Plus
Query 22 ATGGCTTTTGTGAGAAGTCTTTTGGGAGCAAAGAAGATTCTAAGCCGCTCCACCGCAGCA 81
|||||| | ||||||||||| |||| ||||| |||||||||||||||||||||||||||
Sbjct 92 ATGGCTCTGGTGAGAAGTCTACTGGGTGCAAAAAAGATTCTAAGCCGCTCCACCGCAGCA 151
Query 82 GCCTCAGCGGCACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGAGCCTGAAGAAGAGA 141
| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 152 GTCTCGGCGGCACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGAGCCAGAAGAAAAGA 211
Query 142 TATTTGGTGCCAATCTCATATTTAAACCAACCCTCGTTCCAAGCTCTGCTCAGTAAATCC 201
|| || |||||| ||||||| || |||||||| || || ||||||||||||||||||||
Sbjct 212 TACTTAGTGCCACTCTCATACTTGAACCAACCTTCTTTTCAAGCTCTGCTCAGTAAATCT 271
Query 202 GAGGAAGAGTTTGGGTTCGATCATCCGATGGGTGGCTTAACGATTCCTTGTCCTGAAGAT 261
|| || ||||||||||| |||||||||||||| ||||||||||| ||||||| |||||||
Sbjct 272 GAAGATGAGTTTGGGTTTGATCATCCGATGGGGGGCTTAACGATACCTTGTCATGAAGAT 331
Query 262 ACCTTCATCAATGTGACTTCTCGGCTCCAATGAT--TGATCCAACAtttt-ttt 312
|| ||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 332 ACGTTCATCAATGTGACTTCTCGGCTCCAATGATCATGATCCAACATTTTGTTT 385
> AT5G18030.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr5:5968435-5968938 FORWARD LENGTH=504
Length=504
Score = 370 bits (200), Expect = 4e-102
Identities = 260/288 (90%), Gaps = 8/288 (3%)
Strand=Plus/Plus
Query 10 CAAAAATAA-A-AGATGGCTTTTGTGAGAAGTCTTTTGGGAGCAAAGAAGATTCTAAGCC 67
||||||||| | | |||||||| ||||||||||| ||||| |||||||||||||||||||
Sbjct 79 CAAAAATAACAGATATGGCTTTGGTGAGAAGTCTATTGGGTGCAAAGAAGATTCTAAGCC 138
Query 68 GCTCCACCGCAGCAGCCTCAGCGGCACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGA 127
|||||| | | ||| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct 139 GCTCCA-C-C-GCA---TCGGCGGCACCAAAAGGGTTTCTTGCGGTGTACGTAGGAGAGA 192
Query 128 GCCTGAAGAAGAGATATTTGGTGCCAATCTCATATTTAAACCAACCCTCGTTCCAAGCTC 187
||| ||||||||||||||||||||| ||||||| || | |||||| || || |||||||
Sbjct 193 GCCAGAAGAAGAGATATTTGGTGCCGCTCTCATACTTGAGCCAACCTTCATTTCAAGCTC 252
Query 188 TGCTCAGTAAATCCGAGGAAGAGTTTGGGTTCGATCATCCGATGGGTGGCTTAACGATTC 247
| |||||||||||||||||||||||||| || |||||||| ||||||||||||||||| |
Sbjct 253 TTCTCAGTAAATCCGAGGAAGAGTTTGGATTTGATCATCCAATGGGTGGCTTAACGATCC 312
Query 248 CTTGTCCTGAAGATACCTTCATCAATGTGACTTCTCGGCTCCAATGAT 295
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 CTTGTCCTGAAGATACCTTCATCAATGTGACTTCTCGGCTCCAATGAT 360
> AT3G03840.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr3:981072-981798 FORWARD LENGTH=727
Length=727
Score = 224 bits (121), Expect = 4e-58
Identities = 183/213 (86%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 91 GCACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGAGCCTGAAGAAG-AGATAT--TTG 147
|||||||||||||||||||||||||||||||| ||||||| ||||||| ||| || ||
Sbjct 265 GCACCAAAAGGGTTTCTTGCAGTGTACGTAGGGGAGAGCCAGAAGAAGCAGAGATACTTA 324
Query 148 GTGCCAATCTCATATTTAAACCAACCCTCGTTCCAAGCTCTGCTCAGTAAATCCGAGGAA 207
|||| | ||||||| || | ||| || | ||| |||| ||| ||||||||||||||||||
Sbjct 325 GTGCTAGTCTCATACTTGAGCCAGCCATTGTTTCAAGATCTTCTCAGTAAATCCGAGGAA 384
Query 208 GAGTTTGGGTTCGATCATCCGATGGGTGGCTTAACGATTCCTTGTCCTGAAGATACCTTC 267
||||| || || |||||||||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 385 GAGTTCGGATTTGATCATCCGATGGGGGGCTTGACGATCCCTTGTCCTGAAGATACCTTC 444
Query 268 ATCAATGTGACTTCTCGGCTCCAATGATTGATC 300
||| ||| ||||||||| ||||| ||| ||||
Sbjct 445 CTCACTGTAACTTCTCGGATCCAAGGAT-GATC 476
> AT4G38825.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr4:18121526-18122010 FORWARD LENGTH=485
Length=485
Score = 174 bits (94), Expect = 4e-43
Identities = 162/196 (83%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 92 CACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGAGCCTGAAGAAGAGATATTTGGTGC 151
|||||||||||||||||||||||||||| ||||| |||| || ||| ||||| | ||||
Sbjct 154 CACCAAAAGGGTTTCTTGCAGTGTACGTTGGAGAAAGCCAGATGAAAAGATACATAGTGC 213
Query 152 CAATCTCATATTTAAACCAACCCTCGTTCCAAGCTCTGCTCAGTAAATCCGAGGAAGAGT 211
|| |||||||||| ||||| || || || |||||| || | |||||||| || ||||||
Sbjct 214 CAGTCTCATATTTGAACCAGCCTTCATTTCAAGCTTTGTTGAGTAAATCTGAACAAGAGT 273
Query 212 TTGGGTTCGATCATCCGATGGGTGGCTTAACGATTCCTTGTCCTGAAGATACCTTCATCA 271
||||||| |||||||| ||||| ||||| || || ||||| |||| |||||| || ||||
Sbjct 274 TTGGGTTTGATCATCCAATGGGCGGCTTGACCATCCCTTGCCCTGTAGATACATTTATCA 333
Query 272 ATGTGACTTCTCGGCT 287
|| ||||||| |||
Sbjct 334 CCGTCACTTCTCAGCT 349
> AT4G38820.1 | Symbols: | unknown protein; Has 4 Blast hits to
4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr4:18121543-18121975 REVERSE LENGTH=433
Length=433
Score = 174 bits (94), Expect = 4e-43
Identities = 162/196 (83%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 92 CACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGAGCCTGAAGAAGAGATATTTGGTGC 151
|||||||||||||||||||||||||||| ||||| |||| || ||| ||||| | ||||
Sbjct 297 CACCAAAAGGGTTTCTTGCAGTGTACGTTGGAGAAAGCCAGATGAAAAGATACATAGTGC 238
Query 152 CAATCTCATATTTAAACCAACCCTCGTTCCAAGCTCTGCTCAGTAAATCCGAGGAAGAGT 211
|| |||||||||| ||||| || || || |||||| || | |||||||| || ||||||
Sbjct 237 CAGTCTCATATTTGAACCAGCCTTCATTTCAAGCTTTGTTGAGTAAATCTGAACAAGAGT 178
Query 212 TTGGGTTCGATCATCCGATGGGTGGCTTAACGATTCCTTGTCCTGAAGATACCTTCATCA 271
||||||| |||||||| ||||| ||||| || || ||||| |||| |||||| || ||||
Sbjct 177 TTGGGTTTGATCATCCAATGGGCGGCTTGACCATCCCTTGCCCTGTAGATACATTTATCA 118
Query 272 ATGTGACTTCTCGGCT 287
|| ||||||| |||
Sbjct 117 CCGTCACTTCTCAGCT 102
> AT3G03820.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr3:976933-977223 REVERSE LENGTH=291
Length=291
Score = 158 bits (85), Expect = 4e-38
Identities = 172/213 (81%), Gaps = 10/213 (5%)
Strand=Plus/Plus
Query 91 GCACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGAGCCTGA--A-GAAG-AGATAT-- 144
||||||||||||||||||||||||||||| || ||||||| || | |||| ||| |
Sbjct 79 GCACCAAAAGGGTTTCTTGCAGTGTACGTCGGTGAGAGCCAGAGGAAGAAGCAGAGACAC 138
Query 145 -TTGGTGCCAATCTCATATTTAAACCAACCCTCGTTCCAAGCTCTGCTCAGT-AAATCCG 202
||| |||| ||||||| || ||||| || | ||| |||||||| |||| | ||| | |
Sbjct 139 CTTG-TGCCGGTCTCATACTTGAACCAGCCTTTGTTTCAAGCTCTACTCA-TCAAAGCTG 196
Query 203 AGGAAGAGTTTGGGTTCGATCATCCGATGGGTGGCTTAACGATTCCTTGTCCTGAAGATA 262
| |||||||| || ||| ||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct 197 AAGAAGAGTTCGGATTCAATCATCCGATGGGCGGCTTGACGATCCCTTGTCCTGAAGATA 256
Query 263 CCTTCATCAATGTGACTTCTCGGCTCCAATGAT 295
| ||| ||| ||| || |||| | ||||| |||
Sbjct 257 CTTTCCTCACTGTAACGTCTCAGATCCAAGGAT 289
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14577647210
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5