BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941326
Length=313
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18050.1 | Symbols: | SAUR-like auxin-responsive protein fa... 440 3e-123
AT5G18060.1 | Symbols: | SAUR-like auxin-responsive protein fa... 418 2e-116
AT5G18010.1 | Symbols: | SAUR-like auxin-responsive protein fa... 387 4e-107
AT5G18080.1 | Symbols: | SAUR-like auxin-responsive protein fa... 350 6e-96
AT5G18030.1 | Symbols: | SAUR-like auxin-responsive protein fa... 340 3e-93
> AT5G18050.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr5:5974567-5975054 REVERSE LENGTH=488
Length=488
Score = 440 bits (238), Expect = 3e-123
Identities = 289/314 (92%), Gaps = 2/314 (1%)
Strand=Plus/Plus
Query 1 GACAAAGAAAGAAATTATAAATGGCTCTGGTGAGAAGTCTACTGGGTGCCAAAAAGATTC 60
|||||| | || ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 73 GACAAATAGAG-AATTATAAATGGCTCTGGTGAGAAGTCTACTGGGTGCAAAAAAGATTC 131
Query 61 TAAGCCGCTCCACCGCAGCAGTCTCAGCGGCACCAATAGGGTTTCTTACAGTGTACGTAG 120
||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||
Sbjct 132 TAAGCCGCTCCACCGCAGCAGTCTCGGCGGCACCAAAAGGGTTTCTTGCAGTGTACGTAG 191
Query 121 GAGAGAGCCAGAAGAAGAGGTATTTAGTGCCACTCTCATACCTGAACCAGCCTTCGTTTC 180
|||||||||||||||| || || |||||||||||||||||| ||||||| ||||| ||||
Sbjct 192 GAGAGAGCCAGAAGAAAAGATACTTAGTGCCACTCTCATACTTGAACCAACCTTCTTTTC 251
Query 181 AAGCTCTGCTCAGTAAATCTGAAGAAGAGTTTGGGTTCGATCATCCGATGGGTGGCTTAA 240
||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||
Sbjct 252 AAGCTCTGCTCAGTAAATCTGAAGATGAGTTTGGGTTTGATCATCCGATGGGGGGCTTAA 311
Query 241 CGATCCCTTGTCCCGAAGATACCTTCATCAACGTTACTTCTCGGCTCCAATGATGATGAT 300
|||| ||||||| |||||||| |||||||| || ||||||||||||||||||| |||||
Sbjct 312 CGATACCTTGTCATGAAGATACGTTCATCAATGTGACTTCTCGGCTCCAATGATCATGAT 371
Query 301 CCAGCATTT-GTTT 313
||| ||||| ||||
Sbjct 372 CCAACATTTTGTTT 385
> AT5G18060.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr5:5975954-5976496 FORWARD LENGTH=543
Length=543
Score = 418 bits (226), Expect = 2e-116
Identities = 274/297 (92%), Gaps = 3/297 (1%)
Strand=Plus/Plus
Query 19 AAATGGCTCTGGTGAGAAGTCTACTGGGTGCCAAA-AAGATTCTAAGCCGCTCCACCGCA 77
|||||||| |||||||||||||| ||| || |||| |||||||| ||||||||| |||||
Sbjct 75 AAATGGCTTTGGTGAGAAGTCTATTGGTTG-CAAAGAAGATTCTTAGCCGCTCCGCCGCA 133
Query 78 GCAGTCTCAGCGGCACCAATAGGGTTTCTTACAGTGTACGTAGGAGAGAGCCAGAAGAAG 137
|||||||| ||| |||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 134 GCAGTCTCGGCGCCACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGAGCCAGAAGAAG 193
Query 138 AGGTATTTAGTGCCACTCTCATACCTGAACCAGCCTTCGTTTCAAGCTCTGCTCAGTAAA 197
|| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 194 AGATATTTAGTGCCACTCTCATACTTGAACCAGCCTTCTTTTCAAGCTCTGCTCAGTAAA 253
Query 198 TCTGAAGAAGAGTTTGGGTTCGATCATCCGATGGGTGGCTTAACGATCCCTTGTCCCGAA 257
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 254 TCCGAAGAAGAGTTTGGGTTCGATCATCCGATGGGTGGCTTAACGATCCCTTGTCCCGAA 313
Query 258 GATACCTTCATCAACGTTACTTCTCGGCTCCAATGATGATGATCCAGCATT-TGTTT 313
||||| |||||||| || |||||||||||||| ||||||| ||||| ||| |||||
Sbjct 314 GATACTTTCATCAATGTGACTTCTCGGCTCCATTGATGATTATCCAACATAGTGTTT 370
> AT5G18010.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr5:5962897-5963405 REVERSE LENGTH=509
Length=509
Score = 387 bits (209), Expect = 4e-107
Identities = 275/307 (90%), Gaps = 3/307 (1%)
Strand=Plus/Plus
Query 8 AAAGAAATTATAAATGGCTCTGGTGAGAAGTCTACTGGGTGCCAAA-AAGATTCTAAGCC 66
||| ||| || |||||||| | |||||||||||| |||| | |||| |||||||||||||
Sbjct 88 AAATAAAATAAAAATGGCTTTCGTGAGAAGTCTATTGGGAG-CAAAGAAGATTCTAAGCC 146
Query 67 GCTCCACCGCAGCAGTCTCAGCGGCACCAATAGGGTTTCTTACAGTGTACGTAGGAGAGA 126
||||||||||||||| || |||||||||| |||||||||| | ||||||||||||||||
Sbjct 147 GCTCCACCGCAGCAGGATCTGCGGCACCAAAAGGGTTTCTTGCGGTGTACGTAGGAGAGA 206
Query 127 GCCAGAAGAAGAGGTATTTAGTGCCACTCTCATACCTGAACCAGCCTTCGTTTCAAGCTC 186
||||||||||||| ||||| ||||| ||||||||| ||| ||| || || ||||||||||
Sbjct 207 GCCAGAAGAAGAGATATTTGGTGCCGCTCTCATACTTGAGCCAACCGTCATTTCAAGCTC 266
Query 187 TGCTCAGTAAATCTGAAGAAGAGTTTGGGTTCGATCATCCGATGGGTGGCTTAACGATCC 246
||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 267 TGCTCAGTAAATCCGAAGAAGAGTTTGGGTTTGCTCATCCGATGGGTGGCTTAACGATCC 326
Query 247 CTTGTCCCGAAGATACCTTCATCAACGTTACTTCTCGGCTCCAATGATGATGATCCAGCA 306
|||||||||||||||| |||||||| || |||||||||||||||||| ||||||||| ||
Sbjct 327 CTTGTCCCGAAGATACTTTCATCAATGTGACTTCTCGGCTCCAATGAAGATGATCCAACA 386
Query 307 TTTGTTT 313
||| |||
Sbjct 387 TTT-TTT 392
> AT5G18080.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr5:5983840-5984112 FORWARD LENGTH=273
Length=273
Score = 350 bits (189), Expect = 6e-96
Identities = 246/274 (90%), Gaps = 2/274 (1%)
Strand=Plus/Plus
Query 21 ATGGCTCTGGTGAGAAGTCTACTGGGTGCCAAA-AAGATTCTAAGCCGCTCCACCGCAGC 79
|||||| | |||||||||||| |||| | |||| |||||||||||||||||||||| |||
Sbjct 1 ATGGCTTTCGTGAGAAGTCTATTGGGAG-CAAAGAAGATTCTAAGCCGCTCCACCGGAGC 59
Query 80 AGTCTCAGCGGCACCAATAGGGTTTCTTACAGTGTACGTAGGAGAGAGCCAGAAGAAGAG 139
|| || |||||||||| |||||||||| | |||||||||||||||||||||||||||||
Sbjct 60 AGGATCTGCGGCACCAAAAGGGTTTCTTGCGGTGTACGTAGGAGAGAGCCAGAAGAAGAG 119
Query 140 GTATTTAGTGCCACTCTCATACCTGAACCAGCCTTCGTTTCAAGCTCTGCTCAGTAAATC 199
||||| ||||| ||||||| | ||||||||||| ||||||||||| |||||||||||
Sbjct 120 ATATTTGGTGCCTGTCTCATATTTAAACCAGCCTTCATTTCAAGCTCTTCTCAGTAAATC 179
Query 200 TGAAGAAGAGTTTGGGTTCGATCATCCGATGGGTGGCTTAACGATCCCTTGTCCCGAAGA 259
|||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 180 CGAAGAAGAGTTTGGATTTGATCATCCGATGGGAGGCTTAACGATCCCTTGTCCCGAAGA 239
Query 260 TACCTTCATCAACGTTACTTCTCGGCTCCAATGA 293
|||||||||||| || ||||||||||||||||||
Sbjct 240 TACCTTCATCAATGTGACTTCTCGGCTCCAATGA 273
> AT5G18030.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr5:5968435-5968938 FORWARD LENGTH=504
Length=504
Score = 340 bits (184), Expect = 3e-93
Identities = 250/281 (89%), Gaps = 8/281 (3%)
Strand=Plus/Plus
Query 21 ATGGCTCTGGTGAGAAGTCTACTGGGTGCCAAA-AAGATTCTAAGCCGCTCCACCGCAGC 79
|||||| |||||||||||||| |||||| |||| ||||||||||||||||||| | | ||
Sbjct 93 ATGGCTTTGGTGAGAAGTCTATTGGGTG-CAAAGAAGATTCTAAGCCGCTCCA-C-C-GC 148
Query 80 AGTCTCAGCGGCACCAATAGGGTTTCTTACAGTGTACGTAGGAGAGAGCCAGAAGAAGAG 139
| || |||||||||| |||||||||| | |||||||||||||||||||||||||||||
Sbjct 149 A---TCGGCGGCACCAAAAGGGTTTCTTGCGGTGTACGTAGGAGAGAGCCAGAAGAAGAG 205
Query 140 GTATTTAGTGCCACTCTCATACCTGAACCAGCCTTCGTTTCAAGCTCTGCTCAGTAAATC 199
||||| ||||| ||||||||| ||| ||| ||||| ||||||||||| |||||||||||
Sbjct 206 ATATTTGGTGCCGCTCTCATACTTGAGCCAACCTTCATTTCAAGCTCTTCTCAGTAAATC 265
Query 200 TGAAGAAGAGTTTGGGTTCGATCATCCGATGGGTGGCTTAACGATCCCTTGTCCCGAAGA 259
|| ||||||||||| || |||||||| |||||||||||||||||||||||||| |||||
Sbjct 266 CGAGGAAGAGTTTGGATTTGATCATCCAATGGGTGGCTTAACGATCCCTTGTCCTGAAGA 325
Query 260 TACCTTCATCAACGTTACTTCTCGGCTCCAATGATGATGAT 300
|||||||||||| || ||||||||||||||||||| |||||
Sbjct 326 TACCTTCATCAATGTGACTTCTCGGCTCCAATGATCATGAT 366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14527379461
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5