BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941329
Length=313
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18020.1 | Symbols: | SAUR-like auxin-responsive protein fa... 433 6e-121
AT5G18010.1 | Symbols: | SAUR-like auxin-responsive protein fa... 401 2e-111
AT5G18030.1 | Symbols: | SAUR-like auxin-responsive protein fa... 388 1e-107
AT5G18080.1 | Symbols: | SAUR-like auxin-responsive protein fa... 388 1e-107
AT5G18060.1 | Symbols: | SAUR-like auxin-responsive protein fa... 383 6e-106
AT5G18050.1 | Symbols: | SAUR-like auxin-responsive protein fa... 363 7e-100
AT4G38840.1 | Symbols: | SAUR-like auxin-responsive protein fa... 104 5e-22
> AT5G18020.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr5:5966183-5966677 REVERSE LENGTH=495
Length=495
Score = 433 bits (234), Expect = 6e-121
Identities = 273/292 (93%), Gaps = 1/292 (0%)
Strand=Plus/Plus
Query 21 ATGGCTTTGGTGAGAAGTCTTTTGGGAGCAAAGAAGATTCTAAGCCGCTCCACCGCAGCA 80
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 98 ATGGCTTTTGTGAGAAGTCTATTGGGAGCAAAGAAGATTCTAAGCCGCTCCACCACAGCA 157
Query 81 CCCTCTGCAGCACCAAAAGGTTTTCTTGCAGTGTACGTAGGAGAGAGCCAAAAGAAGAGA 140
|||| || ||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 158 GCCTCGGCGGCACCAAAAGGGTTTCTTGCAGTGTACGTAGGTGAGAGCCAAAAGAAGAGA 217
Query 141 TATTTGGTGCCAATATCCTATTTGAACCAGCCTTCATTTCAAGCTCTTCTCAGTAAATCC 200
||| |||||||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 218 TATCTGGTGCCAATCTCATATTTAAACCAGCCTTCATTTCAAGCTCTTCTCAGTAAATCC 277
Query 201 GAGGAAGAGTTTGGATTTGATCATCCAATGGGTGGCTTAACGATTCCTTGTCCTGAAGAT 260
||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||
Sbjct 278 GAGGAAGAGTTTGGATTCGATCATCCAATGGGTGGCTTAACGATCCCCTGTCCTGAAGAT 337
Query 261 ACATTCATCAATGTGACTTCTCGGCTCCAATGATGATTGATCCAACATTTTT 312
|||||||||||||||||||||||| ||||| |||||| || |||||||||||
Sbjct 338 ACATTCATCAATGTGACTTCTCGGTTCCAACGATGAT-GAGCCAACATTTTT 388
> AT5G18010.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr5:5962897-5963405 REVERSE LENGTH=509
Length=509
Score = 401 bits (217), Expect = 2e-111
Identities = 274/302 (91%), Gaps = 1/302 (0%)
Strand=Plus/Plus
Query 12 aaaaaaaaaaTGGCTTTGGTGAGAAGTCTTTTGGGAGCAAAGAAGATTCTAAGCCGCTCC 71
|||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 92 AAAATAAAAATGGCTTTCGTGAGAAGTCTATTGGGAGCAAAGAAGATTCTAAGCCGCTCC 151
Query 72 ACCGCAGCACCCTCTGCAGCACCAAAAGGTTTTCTTGCAGTGTACGTAGGAGAGAGCCAA 131
||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 152 ACCGCAGCAGGATCTGCGGCACCAAAAGGGTTTCTTGCGGTGTACGTAGGAGAGAGCCAG 211
Query 132 AAGAAGAGATATTTGGTGCCAATATCCTATTTGAACCAGCCTTCATTTCAAGCTCTTCTC 191
|||||||||||||||||||| | || || |||| ||| || |||||||||||||| |||
Sbjct 212 AAGAAGAGATATTTGGTGCCGCTCTCATACTTGAGCCAACCGTCATTTCAAGCTCTGCTC 271
Query 192 AGTAAATCCGAGGAAGAGTTTGGATTTGATCATCCAATGGGTGGCTTAACGATTCCTTGT 251
||||||||||| ||||||||||| |||| |||||| ||||||||||||||||| ||||||
Sbjct 272 AGTAAATCCGAAGAAGAGTTTGGGTTTGCTCATCCGATGGGTGGCTTAACGATCCCTTGT 331
Query 252 CCTGAAGATACATTCATCAATGTGACTTCTCGGCTCCAATGATGATTGATCCAACATTTT 311
|| |||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 332 CCCGAAGATACTTTCATCAATGTGACTTCTCGGCTCCAATGAAGAT-GATCCAACATTTT 390
Query 312 TT 313
||
Sbjct 391 TT 392
> AT5G18030.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr5:5968435-5968938 FORWARD LENGTH=504
Length=504
Score = 388 bits (210), Expect = 1e-107
Identities = 266/292 (91%), Gaps = 8/292 (3%)
Strand=Plus/Plus
Query 21 ATGGCTTTGGTGAGAAGTCTTTTGGGAGCAAAGAAGATTCTAAGCCGCTCCACCGCAGCA 80
|||||||||||||||||||| ||||| ||||||||||||||||||||||||| | | |||
Sbjct 93 ATGGCTTTGGTGAGAAGTCTATTGGGTGCAAAGAAGATTCTAAGCCGCTCCA-C-C-GCA 149
Query 81 CCCTCTGCAGCACCAAAAGGTTTTCTTGCAGTGTACGTAGGAGAGAGCCAAAAGAAGAGA 140
|| || ||||||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 150 ---TCGGCGGCACCAAAAGGGTTTCTTGCGGTGTACGTAGGAGAGAGCCAGAAGAAGAGA 206
Query 141 TATTTGGTGCCAATATCCTATTTGAACCAGCCTTCATTTCAAGCTCTTCTCAGTAAATCC 200
||||||||||| | || || |||| ||| ||||||||||||||||||||||||||||||
Sbjct 207 TATTTGGTGCCGCTCTCATACTTGAGCCAACCTTCATTTCAAGCTCTTCTCAGTAAATCC 266
Query 201 GAGGAAGAGTTTGGATTTGATCATCCAATGGGTGGCTTAACGATTCCTTGTCCTGAAGAT 260
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 267 GAGGAAGAGTTTGGATTTGATCATCCAATGGGTGGCTTAACGATCCCTTGTCCTGAAGAT 326
Query 261 ACATTCATCAATGTGACTTCTCGGCTCCAATGATGAT--TGATCCAACATTT 310
|| ||||||||||||||||||||||||||||||| || |||||| ||||||
Sbjct 327 ACCTTCATCAATGTGACTTCTCGGCTCCAATGATCATGATGATCCGACATTT 378
> AT5G18080.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr5:5983840-5984112 FORWARD LENGTH=273
Length=273
Score = 388 bits (210), Expect = 1e-107
Identities = 252/273 (92%), Gaps = 0/273 (0%)
Strand=Plus/Plus
Query 21 ATGGCTTTGGTGAGAAGTCTTTTGGGAGCAAAGAAGATTCTAAGCCGCTCCACCGCAGCA 80
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1 ATGGCTTTCGTGAGAAGTCTATTGGGAGCAAAGAAGATTCTAAGCCGCTCCACCGGAGCA 60
Query 81 CCCTCTGCAGCACCAAAAGGTTTTCTTGCAGTGTACGTAGGAGAGAGCCAAAAGAAGAGA 140
||||| ||||||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 61 GGATCTGCGGCACCAAAAGGGTTTCTTGCGGTGTACGTAGGAGAGAGCCAGAAGAAGAGA 120
Query 141 TATTTGGTGCCAATATCCTATTTGAACCAGCCTTCATTTCAAGCTCTTCTCAGTAAATCC 200
||||||||||| | || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 TATTTGGTGCCTGTCTCATATTTAAACCAGCCTTCATTTCAAGCTCTTCTCAGTAAATCC 180
Query 201 GAGGAAGAGTTTGGATTTGATCATCCAATGGGTGGCTTAACGATTCCTTGTCCTGAAGAT 260
|| ||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||||
Sbjct 181 GAAGAAGAGTTTGGATTTGATCATCCGATGGGAGGCTTAACGATCCCTTGTCCCGAAGAT 240
Query 261 ACATTCATCAATGTGACTTCTCGGCTCCAATGA 293
|| ||||||||||||||||||||||||||||||
Sbjct 241 ACCTTCATCAATGTGACTTCTCGGCTCCAATGA 273
> AT5G18060.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr5:5975954-5976496 FORWARD LENGTH=543
Length=543
Score = 383 bits (207), Expect = 6e-106
Identities = 267/296 (90%), Gaps = 3/296 (1%)
Strand=Plus/Plus
Query 14 aaaaaaaaTGGCTTTGGTGAGAAGTCTTTTGGGAGCAAAGAAGATTCTAAGCCGCTCCAC 73
|||| |||||||||||||||||||||| |||| |||||||||||||| ||||||||| |
Sbjct 70 AAAAGAAATGGCTTTGGTGAGAAGTCTATTGGTTGCAAAGAAGATTCTTAGCCGCTCCGC 129
Query 74 CGCAGCACCCTCTGCAG-CACCAAAAGGTTTTCTTGCAGTGTACGTAGGAGAGAGCCAAA 132
||||||| ||| || | |||||||||| ||||||||||||||||||||||||||||| |
Sbjct 130 CGCAGCAGTCTCGGC-GCCACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGAGCCAGA 188
Query 133 AGAAGAGATATTTGGTGCCAATATCCTATTTGAACCAGCCTTCATTTCAAGCTCTTCTCA 192
||||||||||||| |||||| | || || |||||||||||||| ||||||||||| ||||
Sbjct 189 AGAAGAGATATTTAGTGCCACTCTCATACTTGAACCAGCCTTCTTTTCAAGCTCTGCTCA 248
Query 193 GTAAATCCGAGGAAGAGTTTGGATTTGATCATCCAATGGGTGGCTTAACGATTCCTTGTC 252
|||||||||| ||||||||||| || |||||||| ||||||||||||||||| |||||||
Sbjct 249 GTAAATCCGAAGAAGAGTTTGGGTTCGATCATCCGATGGGTGGCTTAACGATCCCTTGTC 308
Query 253 CTGAAGATACATTCATCAATGTGACTTCTCGGCTCCAATGATGATTGATCCAACAT 308
| |||||||| |||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 309 CCGAAGATACTTTCATCAATGTGACTTCTCGGCTCCATTGATGATT-ATCCAACAT 363
> AT5G18050.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr5:5974567-5975054 REVERSE LENGTH=488
Length=488
Score = 363 bits (196), Expect = 7e-100
Identities = 261/293 (89%), Gaps = 1/293 (0%)
Strand=Plus/Plus
Query 19 aaaTGGCTTTGGTGAGAAGTCTTTTGGGAGCAAAGAAGATTCTAAGCCGCTCCACCGCAG 78
|||||||| ||||||||||||| |||| ||||| |||||||||||||||||||||||||
Sbjct 90 AAATGGCTCTGGTGAGAAGTCTACTGGGTGCAAAAAAGATTCTAAGCCGCTCCACCGCAG 149
Query 79 CACCCTCTGCAGCACCAAAAGGTTTTCTTGCAGTGTACGTAGGAGAGAGCCAAAAGAAGA 138
|| ||| || ||||||||||| ||||||||||||||||||||||||||||| ||||| |
Sbjct 150 CAGTCTCGGCGGCACCAAAAGGGTTTCTTGCAGTGTACGTAGGAGAGAGCCAGAAGAAAA 209
Query 139 GATATTTGGTGCCAATATCCTATTTGAACCAGCCTTCATTTCAAGCTCTTCTCAGTAAAT 198
|||| || |||||| | || || |||||||| ||||| ||||||||||| ||||||||||
Sbjct 210 GATACTTAGTGCCACTCTCATACTTGAACCAACCTTCTTTTCAAGCTCTGCTCAGTAAAT 269
Query 199 CCGAGGAAGAGTTTGGATTTGATCATCCAATGGGTGGCTTAACGATTCCTTGTCCTGAAG 258
| || || |||||||| ||||||||||| ||||| ||||||||||| ||||||| |||||
Sbjct 270 CTGAAGATGAGTTTGGGTTTGATCATCCGATGGGGGGCTTAACGATACCTTGTCATGAAG 329
Query 259 ATACATTCATCAATGTGACTTCTCGGCTCCAATGATGATTGATCCAACATTTT 311
|||| ||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 330 ATACGTTCATCAATGTGACTTCTCGGCTCCAATGATCAT-GATCCAACATTTT 381
> AT4G38840.1 | Symbols: | SAUR-like auxin-responsive protein
family | chr4:18124978-18125559 REVERSE LENGTH=582
Length=582
Score = 104 bits (56), Expect = 5e-22
Identities = 122/152 (80%), Gaps = 11/152 (7%)
Strand=Plus/Plus
Query 105 CTT-GCAGTGTACGTAGGAGAGAGCCAAA-A-GAAGAGATATT-TGGTGCCAATATCCTA 160
||| || || ||||||||||| | | ||| | |||||||| || | || || | || ||
Sbjct 197 CTTAGCGGTTTACGTAGGAGA-A-CAAAATATGAAGAGAT-TTGTAGTTCCGGTTTCGTA 253
Query 161 TTTGAACCAGCCTTCATTTCAAGCTCT-TCTCAGTAAA-TCCGAGGAAGAGTTTGGATTT 218
||| |||||||||||||||||| ||| | | || ||| | ||||||||||||||||||
Sbjct 254 CTTGGACCAGCCTTCATTTCAAGATCTAT-TAAG-AAAGGCAGAGGAAGAGTTTGGATTT 311
Query 219 GATCATCCAATGGGTGGCTTAACGATTCCTTG 250
|||||||||||||||||| | || || |||||
Sbjct 312 GATCATCCAATGGGTGGCCTCACAATCCCTTG 343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14527379461
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5