BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941333
Length=919
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18120.1 | Symbols: ATAPRL7, APRL7 | APR-like 7 | chr5:59909... 1389 0.0
AT3G03860.1 | Symbols: ATAPRL5, APRL5 | APR-like 5 | chr3:99212... 460 8e-129
> AT5G18120.1 | Symbols: ATAPRL7, APRL7 | APR-like 7 | chr5:5990956-5993936
FORWARD LENGTH=1539
Length=1539
Score = 1389 bits (752), Expect = 0.0
Identities = 865/920 (94%), Gaps = 5/920 (1%)
Strand=Plus/Plus
Query 1 CCGTAGATTTAGGTTTCTGGTTTAATGAATTTGTGGGTCTCCTCCATAATCCTCTTATCT 60
||||||||||||| | || ||||||||||||||||| | || ||| ||||| | |||
Sbjct 406 CCGTAGATTTAGGATCCTTAATTAATGAATTTGTGGGT-T--TCAATATTCCTCGTCTCT 462
Query 61 GCGATAGCTGGATCATGCTTACCTTGTGGGTTAGCTTACGTTGACGTTTGCAATCACGAT 120
|| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 463 GCAATAGCTGGATCATGCTTACCTTCTGGGTTTGCTTACGTTGACGTTTGCAATCACGAA 522
Query 121 TTCGAGGTGTTTCGATGCGAGATCGAGCAAATATGTCCTCGTT-TTCTCTATCCGAGCCC 179
||||||||||| |||| || ||||||||||| ||||||||||| || | ||||| |||||
Sbjct 523 TTCGAGGTGTTCCGATCCGTGATCGAGCAAAAATGTCCTCGTTCTT-TGTATCCAAGCCC 581
Query 180 TCCTATCGAGGTAGATGGAGACTTGCTAGACAAACTCATGGATGCAAACAATGGAAATGC 239
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 582 TCCTATCGAGGTAGATGGAGACTTGCTAGACAAACTCATGGATGCAAACCATGGAAATGC 641
Query 240 TTATACATCCATACTATTTTATGCCTCACGGTGCCCGTTTTCACGTGCAGTACGCCCAAA 299
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 642 CTATATATCCATACTATTTTATACCTCACGGTGCCCGTTTTCACGTGCAGTACGCCCAAA 701
Query 300 GTTTGATGTTCTGAGTTCAATGTTTCCTCACATAAGGCACCTGATTGTTGAGCAATCTCA 359
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 702 GTTTGATGTTCTGAGTTCAATGTTTCCTCACATAACGCACCTGATTGTTGAGCAATCTCA 761
Query 360 GGCTTTACCATCTGTCTTTTCTAGGTATGGTATCCATAGCTTGCCTTCAATCCTGATGGT 419
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 762 GGCTTTACCATCTGTGTTTTCTAGGTATGGTATCCATAGCTTGCCTTCAATCCTGATGGT 821
Query 420 GAATCAAACAATGAAGATGCGATACCATGGTCAAAAGGATCTTGCATCCCTTATCCAGTT 479
|||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||
Sbjct 822 GAATCAAACAATGAAGATGCGATACCATGGTCCAAAGGATCTTGCATCCCTGATTCAGTT 881
Query 480 TTACAAGGAAACAACAGGTCTTAAACCTGTTCAGTATGTGGATGATGTTGAACCAACAAG 539
|||||||||||||||||||||||||||||| |||||| ||||||| | ||||||||||||
Sbjct 882 TTACAAGGAAACAACAGGTCTTAAACCTGTCCAGTATATGGATGAAGGTGAACCAACAAG 941
Query 540 CTTGGACACTGATGGTAACCTGATCACATGGCTACACAACGGGTCATCTATCAGAGAAGT 599
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 942 CTTGGACACTGATGGAAACCTGATCACATGGCTACACAACGGGTCATCTATCAGAGAAAT 1001
Query 600 AGCAGAAAGAGAGCCATATATGGTACTTGCGTTGATGTTTCTGTCTTTGAAACTGGCAAT 659
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1002 AGCAGAAAGAGAGCCATATATGGTACTTGCACTAATGTTTCTGTCTTTGAAACTGGCAAT 1061
Query 660 TTTGATCTTCCCCATCATGGGATCACGCTTGAAAACGTTATGGGCATTGTATGTTCCGCA 719
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1062 TTTGATCTTCCCCATCATGGGATCACGGTTGAAAACGTTATGGGCATTGTATGTTCCGCA 1121
Query 720 TCTGAGCTTGGCTATACTCGGTGAGACAAGCCAACTCTTTGGCCGTGCCCTGCACATGAT 779
||||||||||| ||||| |||||||| |||||||| |||||||||||||| ||||||||
Sbjct 1122 TCTGAGCTTGGGAATACTTGGTGAGACTAGCCAACTGTTTGGCCGTGCCCTACACATGAT 1181
Query 780 CGATGTGAGGAGACTATGGATGAAACTGAGACTCACCAAAACAAGGAACTTCCAAGAAAG 839
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1182 CGATGTGAGGAGACTATGGATAAAACTGAGACTCACCAAAACAAGGAACTTCCAAGAAAG 1241
Query 840 GGCAAAGAACGCACTTGCATCGGTCTCGCTAGGAAAATCTTCATCACAATCAGCCTAAAA 899
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1242 AGCAAAGAACGCACTTGCATCAGTCTCACTAGGAAAATCTTCATCACAATCAGCCTAAAA 1301
Query 900 GGGTGATTCAGAAATACTTC 919
|||||||| |||||| ||||
Sbjct 1302 GGGTGATTTAGAAATCCTTC 1321
> AT3G03860.1 | Symbols: ATAPRL5, APRL5 | APR-like 5 | chr3:992128-994580
FORWARD LENGTH=1505
Length=1505
Score = 460 bits (249), Expect = 8e-129
Identities = 606/773 (78%), Gaps = 45/773 (6%)
Strand=Plus/Plus
Query 105 CGTTTGCAATCACGATTTCGAGGTGTTTCGATGCGAGATCGA-GCAAATATGTCCTCGTT 163
|||||||||| |||| |||||| ||||||||| ||| | || || || |||||||| ||
Sbjct 427 CGTTTGCAATTACGAATTCGAGCTGTTTCGATTCGATTTAGAGGCCAA-ATGTCCTCCTT 485
Query 164 TTCTCTATCCGAGC-CCTCCTATCGAGGTAGATGGAGACTTGCTAGACAAACTCATGGAT 222
||| ||||| | | |||||||| |||||||||||||||| ||||||| || |||| |
Sbjct 486 CTCTGTATCC-AACTCCTCCTATTGAGGTAGATGGAGACTCACTAGACAGGCTAATGGCT 544
Query 223 GCA-AACAATGGAAATGCTTATACATCCATACTATTTTATGCCTCAC-GGTGCCCGTTTT 280
|| ||| ||||||||||||||| || |||| |||||||| || | ||||||| || |
Sbjct 545 TCACAAC-ATGGAAATGCTTATATGTCTGTACTCTTTTATGCTTC-CTGGTGCCCATTCT 602
Query 281 CACGTGCAGTACGCCCAAAGTTTGATGT-TCTGAGTTCAATGTTTCCTCACATA-AGGCA 338
||||||| || ||||| ||||||||| | | ||||||| ||||||||||| ||| | ||
Sbjct 603 CACGTGCTGTGCGCCCTAAGTTTGATATGT-TGAGTTCCATGTTTCCTCAAATACA-ACA 660
Query 339 CCTGA-TTGTTGAGCAATCTCAGGCTTTACCATCTGTCTTTTCTAGGTATGGTATCCATA 397
||| | ||| ||||| ||||| || | |||||||||||||||||||||||||||||||
Sbjct 661 CCT-AGCTGTGGAGCATTCTCAAGCACTGCCATCTGTCTTTTCTAGGTATGGTATCCATA 719
Query 398 GCTTGCCTTCAATCCTGATGGTGAATCAAACAATGAAGATGC--GATACCATGGTCAAAA 455
|||| ||||||||||||||||| |||||||| | || |||| | |||||||||| |||
Sbjct 720 GCTTACCTTCAATCCTGATGGTAAATCAAACTTT-AA-ATGCTCGGTACCATGGTCGAAA 777
Query 456 GGATCTTGCATCCCTTATCCAGTTTTAC-AAGGAAACAACAGGTCTTAAACCTGTTCAGT 514
||||||| |||||| || ||||||| ||| | ||||||| || ||||||| ||||
Sbjct 778 GGATCTTATATCCCTGATTGAGTTTTATGAAG-AGGCAACAGGCCTCCAACCTGTCCAGT 836
Query 515 ATGTGGATGATGTTGAACCAACAAGCTTGGACAC---TGATGGTAACCTGATCACATGGC 571
|||||| ||| | ||||||||| |||| | | |||||||||| |||||||||||
Sbjct 837 ATGTGGCTGAAGGGGAACCAACAGGCTTAAATGCCGGTGATGGTAACTTGATCACATGGT 896
Query 572 TACACAACGGGTCATCTATCAGAGAAGTAG-CAGAA-AGAGAGCCATATAT-GGTACT-T 627
| | ||| ||| ||||||| |||||| || || || | ||| || | | | |||||| |
Sbjct 897 TGCGCAAGGGGACATCTATTAGAGAAATATTCA-AACA-AGATCCGT-TCTTGGTACTAT 953
Query 628 GCGT-TGATGTTTCTGTCTTTG-AAACTGGCAATT-TTGATCTTCCCCATCATGG-GA-T 682
| | || ||||| | | ||| ||| ||||||| ||| |||||||||| | | || |
Sbjct 954 -C-TCTGCTGTTTATCTGTTTACAAA-TGGCAATCCTTG-TCTTCCCCAT-A-GCTGAAT 1007
Query 683 CACGCTTGAAAACGTTATGGGCATTGT-ATGTTCCGCA-TCTGAGCTTGGCTATACTCGG 740
| ||| ||| | |||||||||| || | | ||| | || | ||| ||||| | | | ||
Sbjct 1008 CCCGCATGAGAGCGTTATGGGC-TTCTTACGTTGC-CAATTTGAACTTGGGAAGATTTGG 1065
Query 741 TGAGACAAGCCAACTCTTTGGCCGTGCCCTGCACATGATCGATGTGAGGAGACTATGGAT 800
|||| ||||||||| || ||||| | |||||| ||||||||||||| ||||| |
Sbjct 1066 AGAGATAAGCCAACTGTTCAACCGTGGTATTCACATGGTCGATGTGAGGAGGTTATGGTT 1125
Query 801 GAAACTGAGACTCACCAAAACAAGGAACTTCCAAGAAAGGGCAAAGAACGCAC 853
|||||| || ||| ||||||||| |||||||| |||||||||||||||||||
Sbjct 1126 GAAACTAAGTCTCGTCAAAACAAGAAACTTCCATGAAAGGGCAAAGAACGCAC 1178
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44909327418
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5