BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941343
Length=837
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18210.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 1096 0.0
> AT5G18210.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr5:6017865-6019993 FORWARD LENGTH=1908
Length=1908
Score = 1096 bits (593), Expect = 0.0
Identities = 685/731 (94%), Gaps = 0/731 (0%)
Strand=Plus/Plus
Query 35 GCTTCGTCAGTTTCCTCTCTCGCCGGCCGAGTCGCGATAGTCACCGGTTCTTCTCGCGGA 94
||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 4 GCTTCCTCAGTCTCCTCTCTCGCCGGACGAGTCGCGATAGTCACCGGTTCTTCTCGCGGA 63
Query 95 ATCGGCCGAGCCATAGCCATACACCTCGCCGAGCTCAGCGCCAAGATAGTCATCAACTAC 154
||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 64 ATCGGCCGAGCTATAGCCATACATCTCGCCGAGCTCGGCGCCAAGATAGTCATCAACTAC 123
Query 155 ACCACTAGATCCACCGAGGCCGATCAAGTCGCCGCGGAAATCAACTCATCTGCCGGCGCC 214
||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| ||
Sbjct 124 ACCACCAGATCCACCGAGGCCGATCAAGTCGCCGCAGAAATCAACTCATCCGCCGGCACC 183
Query 215 GGTCCGGAACCGATAGCCTTCGTATTCCGCGCCGATATCTCAGAGCCAAGCCAGGTCAAG 274
| |||| ||||||| ||| |||| |||| ||||||||||||||| |||||||| | |||
Sbjct 184 GTTCCGCAACCGATCGCCGTCGTGTTCCTCGCCGATATCTCAGAACCAAGCCAAATTAAG 243
Query 275 TCTCTCTTCGACGCGACGGAGAAAGCTTTTAACTCGCCGGTTCACATCCTGGTTAACTCA 334
||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 244 TCTCTCTTCGACGCGGCGGAGAAAGCCTTTAACTCGCCGGTTCACATCCTAGTTAACTCA 303
Query 335 GCTGGAATCCTCAATCCTAATTATCCTACCATCGCTAACACTCCCATTGCAGATTTCGAT 394
||||||||||||||||| ||||| ||||||||||| ||||||||||||| ||| ||||||
Sbjct 304 GCTGGAATCCTCAATCCCAATTACCCTACCATCGCCAACACTCCCATTGAAGAATTCGAT 363
Query 395 CGCATCTTCAAGGTGAACACAAGAGGATCATTCTTGTGCTGTAAAGAAGCTGCTAAAAGG 454
||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 364 CGCATCTTCAAGGTGAACACAAGAGGATCATTCTTATGCTGTAAAGAAGCAGCAAAAAGG 423
Query 455 CTAAAACGTGGAGGCGGTGGTCGGATTATAATGCTAACCTCGTCTTTAACCGAGGCGTTA 514
||||||||||||||||||||| |||||||| ||||||| ||||| |||||||||||||||
Sbjct 424 CTAAAACGTGGAGGCGGTGGTAGGATTATACTGCTAACGTCGTCGTTAACCGAGGCGTTA 483
Query 515 ATCCCGGGGCAAGGAGCTTATACAGCATCAAAGGCTGCTGTTGAAGCAATGGTGAAGATT 574
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 484 ATCCCGGGGCAAGGAGCTTATACAGCATCAAAGGCAGCTGTTGAAGCAATGGTGAAGATT 543
Query 575 CTTGCTAAGGAACTTAAAGGTTCAGGAATCACTGCAAACTGTGTTTCTCCAGGGCCTGTT 634
|||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||
Sbjct 544 CTTGCTAAGGAACTTAAAGGTTTAGGCATCACTGCAAACTGTGTATCTCCAGGGCCTGTT 603
Query 635 GCGACGGAGATGTTCTTCGACGGGAAGAGCGAGGAGACGGTGAGGAATATCATCGAGAGG 694
|||||||||||||| || ||||||||||| || |||||||||| ||||||||| ||||||
Sbjct 604 GCGACGGAGATGTTTTTTGACGGGAAGAGTGAAGAGACGGTGATGAATATCATTGAGAGG 663
Query 695 AGTCCTTTTGGTAGGCTTGGTGAGACTAAAGATATTGCTTCTGTTGTTGGTTTCTTAGCT 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 AGTCCTTTTGGTAGGCTTGGTGAGACTAAAGATATTGCTTCTGTTGTTGGTTTCTTAGCT 723
Query 755 AGTGACGGTGG 765
||||| |||||
Sbjct 724 AGTGATGGTGG 734
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40790127364
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5