BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941349
Length=1394
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18260.1 | Symbols: | RING/U-box superfamily protein | chr5... 1524 0.0
AT5G18255.1 | Symbols: | other RNA | chr5:6035624-6037603 FORW... 1046 0.0
> AT5G18260.1 | Symbols: | RING/U-box superfamily protein | chr5:6036202-6038106
REVERSE LENGTH=1427
Length=1427
Score = 1524 bits (825), Expect = 0.0
Identities = 1082/1201 (90%), Gaps = 37/1201 (3%)
Strand=Plus/Plus
Query 225 ATT-TTTGGCCTTCAAGGCGTTGAGAACAAACCAGAGCTCAAAACGGGTGCACTCTGTTG 283
||| ||||||||| |||||| |||| | ||||||||||||||||||||||||||||||||
Sbjct 227 ATTGTTTGGCCTTGAAGGCGGTGAGGATAAACCAGAGCTCAAAACGGGTGCACTCTGTTG 286
Query 284 TATCGTGGCCTCAAGGCCACTGGTTACAACAAAAT-TGTCAGTACGCAGCGCAAGGGATA 342
||| ||||||||||||||||||||||||||||||| | ||| | ||||| ||||||||
Sbjct 287 TATTGTGGCCTCAAGGCCACTGGTTACAACAAAATCT-TCACCCCACAGCGGAAGGGATA 345
Query 343 TTCCTCAATCAAGTCAAGCCGATGCCTTGCAATGGCGGACGAATTTCAGCTTCTCA-C-- 399
||||||||||||||||||| || ||||||||||||||||| ||||||||||||||| |
Sbjct 346 TTCCTCAATCAAGTCAAGCTGAAGCCTTGCAATGGCGGACAAATTTCAGCTTCTCACCTG 405
Query 400 CTGCTGGATATACAAGAGATGGCTTGGAACAAGAAATGGGCGATGAGAGTCCCGCTTTTG 459
||||||| ||||| |||||||| |||||||| || ||| | |||||||||||||||||||
Sbjct 406 CTGCTGGCTATACTAGAGATGGTTTGGAACAGGATATGAGTGATGAGAGTCCCGCTTTTG 465
Query 460 CATT-CTACTCTAGCAGCAGTAGACAAAGAAAAAGTTTGGAATTCAGGTTTCAGGAATCG 518
|||| | |||| |||||||||||||||||||||||||||||||||| |||||| | |||
Sbjct 466 CATTGC-ACTCGGGCAGCAGTAGACAAAGAAAAAGTTTGGAATTCAGATTTCAGCAGTCG 524
Query 519 CCAAGATGGGCTTCAAACTCATCTGCTTCTGGTGGGAATGAACAGAAAACGTCCATT-G- 576
|||||||||||| || ||||||||||||||| |||||| ||||||||||| ||| || |
Sbjct 525 CCAAGATGGGCTCCATACTCATCTGCTTCTGATGGGAACGAACAGAAAACCTCC-TTGGT 583
Query 577 T--TGATAGTCTACCAAGACCAACTAACTCAAATCCTCAATGCATAAACGAGGAGAACGG 634
| | |||||||| ||||||||| || |||||||||||||||| ||||||||||||||||
Sbjct 584 TAATAATAGTCTAACAAGACCAAATAGCTCAAATCCTCAATGCTTAAACGAGGAGAACGG 643
Query 635 TTTTGATAGAGACAGTACAGCCATCTCAACGAGTTTGAGATCTTTGCTGTCTCTTTCAGA 694
|||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 644 TTTTGATAGAGACAGTACCGCCATCTCAACGAGTTTCAGATCGTTGCTGTCTCTTTCAGA 703
Query 695 GTCATCTGCCCCATGGGAGACT-C--CTAGTAAGCAGTCTTCCAGCCTTACTCACTGTTC 751
|||||||| ||||||||||||| | | | || ||||||||||||||||||||||| ||
Sbjct 704 GTCATCTGTCCCATGGGAGACTCCGACCAACAATCAGTCTTCCAGCCTTACTCACTGCTC 763
Query 752 TTACCCTCGAGTCTTCTGCAACCCGGTTTCAGTTTGTGAGAATCCTGAACCCGATCATAC 811
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 764 TTACCCTCGAGTCTTCTGCAACCCGGTTTCAGTTTGTGAGAATCCTGAACCTGATCATAC 823
Query 812 ACAAGAAGATTCGTCCACAAATCCTGATTCCAGTTTCATAACGTCCACAAGAAACCACCA 871
|||||||| |||||||||||||||| ||||||| |||| | ||||||||||||||||||
Sbjct 824 GCAAGAAGACTCGTCCACAAATCCTGGTTCCAGTATCATGATGTCCACAAGAAACCACCA 883
Query 872 AG--T-A---G-AG-G-AAGAAGTATCACCAAACTCGAACAGCAATGACATGCTGCTAGA 922
|| | | | || | ||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 884 AGGCTCACCAGTAGAGGAAGAAGTATCACCAAACTCGAGCAGCAATGACATGTTGCTAGA 943
Query 923 TGTTGAAAGGCCCAATGATACAGAAGTCGAAAACCCGAGAACTGAACCAGGTTCAATGAC 982
||||||||| ||||||| |||||||||| |||||||||| |||||| ||||||||||||
Sbjct 944 TGTTGAAAGATCCAATGACACAGAAGTCGCAAACCCGAGATCTGAACAAGGTTCAATGAC 1003
Query 983 ACATCAGAGATGCGGGATTTGCAAGAAGCTTTTATCTCAGAAATCTCCATGGAGCTCATA 1042
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1004 ACATCAAAGATGCGGGATTTGCAAGAAGCTTTTATCTCAGAAATCTCCATGGAGCTCATA 1063
Query 1043 CAAGATAATGAGATCAAGAGACATGCCAGCCGCTGGTGTTTTCCCCTGCCATCACGTCTA 1102
||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1064 CAAGATATTGAGATCCAGAGACATGCCAGCCACTGGTGTTTTCCCCTGCCATCACGTCTA 1123
Query 1103 CCATGTTGAGTGTTTAGACAAAGTGACGCCAACAGCTGAAACCCGAGACCCGTCTTGTCC 1162
||||||||||||||||||||||| || ||||||||| ||||| ||||||||||||||||
Sbjct 1124 CCATGTTGAGTGTTTAGACAAAGCAACCCCAACAGCTCAAACCAGAGACCCGTCTTGTCC 1183
Query 1163 TGTTTGCTCAAACACCATTGGAGCAATGGAGCAGACACTGATAGCACCTGAAACATTGCA 1222
||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||
Sbjct 1184 TGTTTGCTCAAACACCATTGGAGTAATGGAACAGCCACTGATAGCACCTGAAACATTGCA 1243
Query 1223 AATGGCTCTAAGATCTCTCAGAAGAAGCCGCACAACTTTGGAGTTAGAGAGAGTAAGTA- 1281
|||||||||||||||||||||||||||||||||| || | || ||||||| |||||| |
Sbjct 1244 AATGGCTCTAAGATCTCTCAGAAGAAGCCGCACAGCTCTAGAATTAGAGACAGTAAG-AG 1302
Query 1282 TCCCTTGCAATAACAATCAAAGAAGACACA------GAAG---CCAGAAATGGGAAAAAC 1332
|||||| |||| |||||||||||||||||| |||| ||| |||||||| ||||
Sbjct 1303 TCCCTTCCAATGACAATCAAAGAAGACACAATACCAGAAGAAGCCATAAATGGGACAAAC 1362
Query 1333 TCGGCTGCTGTTTGAATATAAGCTTCTCATCTTCTTCCTAGAA-TCCAACATTACCCGAT 1391
|| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1363 TCAGCTGCTGTTTGAATATAAGCTTCTCATCTTCTTCCTAGAAATCCAACATGACCCGAT 1422
Query 1392 T 1392
|
Sbjct 1423 T 1423
> AT5G18255.1 | Symbols: | other RNA | chr5:6035624-6037603 FORWARD
LENGTH=1980
Length=1980
Score = 1046 bits (566), Expect = 0.0
Identities = 720/791 (91%), Gaps = 24/791 (3%)
Strand=Plus/Minus
Query 625 AGGAGAACGGTTTTGATAGAGACAGTACAGCCATCTCAACGAGTTTGAGATCTTTGCTGT 684
|||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct 1372 AGGAGAACGGTTTTGATAGAGACAGTACCGCCATCTCAACGAGTTTCAGATCGTTGCTGT 1313
Query 685 CTCTTTCAGAGTCATCTGCCCCATGGGAGACT-C--CTAGTAAGCAGTCTTCCAGCCTTA 741
|||||||||||||||||| ||||||||||||| | | | || ||||||||||||||||
Sbjct 1312 CTCTTTCAGAGTCATCTGTCCCATGGGAGACTCCGACCAACAATCAGTCTTCCAGCCTTA 1253
Query 742 CTCACTGTTCTTACCCTCGAGTCTTCTGCAACCCGGTTTCAGTTTGTGAGAATCCTGAAC 801
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 CTCACTGCTCTTACCCTCGAGTCTTCTGCAACCCGGTTTCAGTTTGTGAGAATCCTGAAC 1193
Query 802 CCGATCATACACAAGAAGATTCGTCCACAAATCCTGATTCCAGTTTCATAACGTCCACAA 861
| |||||||| |||||||| |||||||||||||||| ||||||| |||| | ||||||||
Sbjct 1192 CTGATCATACGCAAGAAGACTCGTCCACAAATCCTGGTTCCAGTATCATGATGTCCACAA 1133
Query 862 G-AA--ACC-A--C-CA--AGTAGAGGAAGAAGTATCACCAAACTCGAACAGCAATGACA 912
| || ||| | | || ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1132 GAAACCACCAAGGCTCACCAGTAGAGGAAGAAGTATCACCAAACTCGAGCAGCAATGACA 1073
Query 913 TGCTGCTAGATGTTGAAAGGCCCAATGATACAGAAGTCGAAAACCCGAGAACTGAACCAG 972
|| |||||||||||||||| ||||||| |||||||||| |||||||||| |||||| ||
Sbjct 1072 TGTTGCTAGATGTTGAAAGATCCAATGACACAGAAGTCGCAAACCCGAGATCTGAACAAG 1013
Query 973 GTTCAATGACACATCAGAGATGCGGGATTTGCAAGAAGCTTTTATCTCAGAAATCTCCAT 1032
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1012 GTTCAATGACACATCAAAGATGCGGGATTTGCAAGAAGCTTTTATCTCAGAAATCTCCAT 953
Query 1033 GGAGCTCATACAAGATAATGAGATCAAGAGACATGCCAGCCGCTGGTGTTTTCCCCTGCC 1092
||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 952 GGAGCTCATACAAGATATTGAGATCCAGAGACATGCCAGCCACTGGTGTTTTCCCCTGCC 893
Query 1093 ATCACGTCTACCATGTTGAGTGTTTAGACAAAGTGACGCCAACAGCTGAAACCCGAGACC 1152
||||||||||||||||||||||||||||||||| || ||||||||| ||||| ||||||
Sbjct 892 ATCACGTCTACCATGTTGAGTGTTTAGACAAAGCAACCCCAACAGCTCAAACCAGAGACC 833
Query 1153 CGTCTTGTCCTGTTTGCTCAAACACCATTGGAGCAATGGAGCAGACACTGATAGCACCTG 1212
||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||
Sbjct 832 CGTCTTGTCCTGTTTGCTCAAACACCATTGGAGTAATGGAACAGCCACTGATAGCACCTG 773
Query 1213 AAACATTGCAAATGGCTCTAAGATCTCTCAGAAGAAGCCGCACAACTTTGGAGTTAGAGA 1272
|||||||||||||||||||||||||||||||||||||||||||| || | || |||||||
Sbjct 772 AAACATTGCAAATGGCTCTAAGATCTCTCAGAAGAAGCCGCACAGCTCTAGAATTAGAGA 713
Query 1273 GAGTAAGTA-TCCCTTGCAATAACAATCAAAGAAGACACA------GAAG---CCAGAAA 1322
|||||| | |||||| |||| |||||||||||||||||| |||| ||| |||
Sbjct 712 CAGTAAG-AGTCCCTTCCAATGACAATCAAAGAAGACACAATACCAGAAGAAGCCATAAA 654
Query 1323 TGGGAAAAACTCGGCTGCTGTTTGAATATAAGCTTCTCATCTTCTTCCTAGAA-TCCAAC 1381
||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 653 TGGGACAAACTCAGCTGCTGTTTGAATATAAGCTTCTCATCTTCTTCCTAGAAATCCAAC 594
Query 1382 ATTACCCGATT 1392
|| ||||||||
Sbjct 593 ATGACCCGATT 583
Score = 484 bits (262), Expect = 7e-136
Identities = 365/413 (88%), Gaps = 13/413 (3%)
Strand=Plus/Minus
Query 225 ATT-TTTGGCCTTCAAGGCGTTGAGAACAAACCAGAGCTCAAAACGGGTGCACTCTGTTG 283
||| ||||||||| |||||| |||| | ||||||||||||||||||||||||||||||||
Sbjct 1886 ATTGTTTGGCCTTGAAGGCGGTGAGGATAAACCAGAGCTCAAAACGGGTGCACTCTGTTG 1827
Query 284 TATCGTGGCCTCAAGGCCACTGGTTACAACAAAAT-TGTCAGTACGCAGCGCAAGGGATA 342
||| ||||||||||||||||||||||||||||||| | ||| | ||||| ||||||||
Sbjct 1826 TATTGTGGCCTCAAGGCCACTGGTTACAACAAAATCT-TCACCCCACAGCGGAAGGGATA 1768
Query 343 TTCCTCAATCAAGTCAAGCCGATGCCTTGCAATGGCGGACGAATTTCAGCTTCTCA-C-- 399
||||||||||||||||||| || ||||||||||||||||| ||||||||||||||| |
Sbjct 1767 TTCCTCAATCAAGTCAAGCTGAAGCCTTGCAATGGCGGACAAATTTCAGCTTCTCACCTG 1708
Query 400 CTGCTGGATATACAAGAGATGGCTTGGAACAAGAAATGGGCGATGAGAGTCCCGCTTTTG 459
||||||| ||||| |||||||| |||||||| || ||| | |||||||||||||||||||
Sbjct 1707 CTGCTGGCTATACTAGAGATGGTTTGGAACAGGATATGAGTGATGAGAGTCCCGCTTTTG 1648
Query 460 CATT-CTACTCTAGCAGCAGTAGACAAAGAAAAAGTTTGGAATTCAGGTTTCAGGAATCG 518
|||| | |||| |||||||||||||||||||||||||||||||||| |||||| | |||
Sbjct 1647 CATTGC-ACTCGGGCAGCAGTAGACAAAGAAAAAGTTTGGAATTCAGATTTCAGCAGTCG 1589
Query 519 CCAAGATGGGCTTCAAACTCATCTGCTTCTGGTGGGAATGAACAGAAAACGTCCATTG-T 577
|||||||||||| || ||||||||||||||| |||||| ||||||||||| ||| ||| |
Sbjct 1588 CCAAGATGGGCTCCATACTCATCTGCTTCTGATGGGAACGAACAGAAAACCTCC-TTGGT 1530
Query 578 TGATA---GTCTACCAAGACCAACTAACTCAAATCCTCAATGCATAAACGAGG 627
| ||| ||||| ||||||||| || |||||||||||||||| |||||||||
Sbjct 1529 TAATAATAGTCTAACAAGACCAAATAGCTCAAATCCTCAATGCTTAAACGAGG 1477
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68674345560
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5