BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941356
Length=1434
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18340.1 | Symbols: | ARM repeat superfamily protein | chr5... 828 0.0
AT5G18320.1 | Symbols: | ARM repeat superfamily protein | chr5... 815 0.0
> AT5G18340.1 | Symbols: | ARM repeat superfamily protein | chr5:6070640-6072310
REVERSE LENGTH=1483
Length=1483
Score = 828 bits (448), Expect = 0.0
Identities = 942/1174 (80%), Gaps = 60/1174 (5%)
Strand=Plus/Plus
Query 208 CGGTGGTAGTTCCGAAAGAGTTTATA-TGTAAACTCTCGAAGACGATCATGATCGAACCT 266
|||| | ||||||||||||||| | | |||| |||||||||||||||||||||||| |||
Sbjct 324 CGGTTGAAGTTCCGAAAGAGTTCA-AGTGTACACTCTCGAAGACGATCATGATCGATCCT 382
Query 267 GTGATCAT-TGCTTCTGGCCAGACTTTTGAAAAGAAACACATCACAAAGTGGCTGAAGCA 325
|||||||| | |||||| ||||| | |||||||| | | |||||| |||||||||| ||
Sbjct 383 GTGATCATAT-TTTCTGGGCAGACGTATGAAAAGAGATATATCACAGAGTGGCTGAACCA 441
Query 326 TAACAC-TACATGTCCCGA-AACCAAAGC-AGTCCTCTCTC-ACTTGTGTTTGACACCCA 381
| || | |||||||||| | | ||||| | |||||| | || | || |||||||||||||
Sbjct 442 TGAC-CTTACATGTCCC-ACAGCCAAA-CAAGTCCTTTATCGAGTT-TGTTTGACACCCA 497
Query 382 ACCATTCGATCAATGAGTTGATTACGCAATGGTGTCTCGTTAACAAATATGATCGGCCAG 441
|||||| |||||||||||||||||||| ||||||||| | ||||||||||||||||||||
Sbjct 498 ACCATTTGATCAATGAGTTGATTACGCGATGGTGTCTTGCTAACAAATATGATCGGCCAG 557
Query 442 ACCCACAACCATCTG--A-TGAAATA-GTCATTGAGATGTTCACTGGTGACATCGAACCA 497
|||| ||||||||| | || | || || | ||| ||||||||| || ||||||| |
Sbjct 558 CCCCAAAACCATCTGATATTG-ACTATGTAACGGAGCTGTTCACTGATGGCATCGAATCG 616
Query 498 TTGCTTCACCGGATTTCCTCT-C--CCTCCTCGGTTGCAGATCAGATAGAAGCTGCAAAA 554
|||||||| |||||||||||| | ||||||||||||||||||||| |||||||||||||
Sbjct 617 TTGCTTCAGCGGATTTCCTCTCCTTCCTCCTCGGTTGCAGATCAGACAGAAGCTGCAAAA 676
Query 555 GAGCTTGCCCTCCAGACCTCGAAATTTGTCAATGTCTGCGACTTCTTTGTCAAGGAACTC 614
||||| |||||||||||| ||||||||||||||| | ||||||||| |||||||||||
Sbjct 677 GAGCTAGCCCTCCAGACCGAAAAATTTGTCAATGTCCGTGACTTCTTTATCAAGGAACTC 736
Query 615 TATGATTCGATCACTAGGTTGCTCACTCCGCTCTCTAACTTT-GGCGATGACGTAGACTC 673
|||||||||||| ||||| ||||||||||||||| ||| |||||||| ||||||||
Sbjct 737 CCTGATTCGATCACCAGGTTACTCACTCCGCTCTCT-GTTTTGGGCGATGAGGTAGACTC 795
Query 674 GAATCCTGAGCTTCAAGAGAATATCCTCACATCATTGTTGAACATCTCGACTGTT-GAGA 732
|||||| |||||||||||||||||| ||||| | ||||| ||||| |||||| || ||||
Sbjct 796 GAATCCCGAGCTTCAAGAGAATATCGTCACAGCGTTGTTCAACATGTCGACT-TTCGAGA 854
Query 733 A-AAGTCAAAA-AATAATTGCTGAAAATCC-TCTTGTGATCCCTCTGCTTACAAAGTCTT 789
| || | |||| | || |||||||||| || || |||||||| |||||| ||||||||
Sbjct 855 AGAA-T-AAAACAGTACTTGCTGAAAA-CCATCAAGTGATCCCACTGCTTGCAAAGTCTA 911
Query 790 TG-AGGAGGGGGACAGATCAAACAAAAACAGTCTCTGCAGCGACTTTAACGTCACTTTCA 848
|| || | |||| ||| | |||| || | | || || ||||||| |||||||||||
Sbjct 912 TGAAGCA-GGGGTCAGTTGTGACAAGAAGAAACGCTACATTGACTTTAGCGTCACTTTCA 970
Query 849 GGCATTGATTCTAACAAGATTATCATCGGGAACTCGGAAGCACTCAAGGCTCTGATAGAT 908
| |||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||
Sbjct 971 GACATTGATTCTAACAAGATCATCATAGGGAACTCGGTAGCACTCAAGGCTCTGATAGAT 1030
Query 909 CTAATCGGGGACTCGGATGACTTATCAGCAACAGGTGAAGCTGGCTACGCTGTTTTAAAC 968
||||||||||| | ||||||||||||||| || ||| ||| | ||||||| || ||
Sbjct 1031 CTAATCGGGGAGTTGGATGACTTATCAGCTACTCATGATGCTCTTTGCGCTGTTATAGAC 1090
Query 969 CTCTGTTCTGATGAATCGGAGAACATGGAAAA-GGCGATTTCAGA-GGGTTTGATTC-TC 1025
||||||| ||||||| ||||||| ||||||| |||||| || | ||| ||| || |
Sbjct 1091 CTCTGTTGTGATGAAAGGGAGAAC-TGGAAAAAGGCGATCTC-GTTGGGGTTGGCTCCT- 1147
Query 1026 GCAGTACTCAAAAAGATCCTAGCAGGAAGAAAT--GTAGAGAATA-TGGTATCTATCTTG 1082
|| | | ||||||| ||| |||| |||||||| || |||| | || || ||||
Sbjct 1148 GCTGCAATCAAAAATATCAAAGCAAGAAGAAATTTGTTT-GAATCCT--TAGCTGCCTTG 1204
Query 1083 ACATCGATTTCTACAAAC-AAC-CAGGTTAAGGAAAAAATAGAGGAA-CTAGGGATTGTG 1139
||| ||||||| || || ||| | | ||| | || | | || |||||| || |
Sbjct 1205 GCATTGATTTCTCCACACGAACGC-G-TTATCCAGGAAGTGGCT-AATCTAGGGGTTATC 1261
Query 1140 TGTGATATCTTAAAG-ATCTTGAGGAACACAAGCTGCTTGATGACTGGTGAGAACGCTAT 1198
| |||| | |||| | ||||||||||| ||||| ||| || ||||| ||||||||||| |
Sbjct 1262 TATGATCTGTTAA-GTATCTTGAGGAAAACAAGTTGCATGGTGACTTGTGAGAACGCTGT 1320
Query 1199 AGAGGTCCTCTTCAAAATGTTTGATGGAATCAGAGACACGG-CTAGGCTGGGAATTCTC- 1256
|| | || | ||| |||| || | || |||||| | || ||| | ||| ||
Sbjct 1321 AGTGATCGTAGGCAACATGTATGCTAAAAGCAGAGAAA-GGTCTATTAAGAAAATCCTGG 1379
Query 1257 CAAGAAGAGGAGCTTCTATACAAGACATTTACGAAGCTTGCAAGGCAAGGATCAGATCGT 1316
|| ||||||||| || | ||||||||||||| ||| |||||| ||||||||||| | ||
Sbjct 1380 CA-GAAGAGGAGAATCAACACAAGACATTTACAAAGATTGCAACGCAAGGATCAGTT-GT 1437
Query 1317 -GCGGCGA-GAAAAGCACAAGAGATTTTACAGTG 1348
|||| || |||| ||||||| ||||||||||||
Sbjct 1438 TGCGGTGATGAAA-GCACAAGGGATTTTACAGTG 1470
> AT5G18320.1 | Symbols: | ARM repeat superfamily protein | chr5:6064431-6066186
REVERSE LENGTH=1377
Length=1377
Score = 815 bits (441), Expect = 0.0
Identities = 1079/1373 (79%), Gaps = 100/1373 (7%)
Strand=Plus/Plus
Query 32 GACGGAAGCAAACGCCGATACTCTGAGGCTGGAGTTGCACAAGGTACTGACGGAGATTGT 91
||||||| ||||||||||||||||| ||| |||||| || || ||| ||||||||||| |
Sbjct 12 GACGGAAACAAACGCCGATACTCTGCGGCGGGAGTTACAGAAAGTATTGACGGAGATTTT 71
Query 92 CCACGACGGAGTAGG--ACGA--G-GAGGAGGC-AAAG-ATCATCT--AGTTGAGACTGA 142
||||||||| ||| | || | || ||| | ||| | ||| ||||| || |
Sbjct 72 GAACGACGGAGGAGGCAATGATCGCGATGAGACTGAAGCTTTTTCTGGAGTTGTGA---A 128
Query 143 CGCAATTGATGAGGCTGTTACTAGAATCCTTACTTGTCTTG-GGAAAGTAGAATCCAAGA 201
|| |||||||| || | | ||||||||| ||||||| || ||||||||||||| ||||
Sbjct 129 AGCGATTGATGAAGC-GGT--TAGAATCCTGACTTGTC-TGAGGAAAGTAGAATCGAAGA 184
Query 202 -A---G---C--------CGCCGGTGGTAGTTCCGAAAGAGTTTATATGTAAACTCTCGA 246
| | | | ||||||| ||| ||||||||||||||||||| |||||| |
Sbjct 185 TACCGGAATCTGATATTTCTCCGGTGGAAGTGCCGAAAGAGTTTATATGTACACTCTCCA 244
Query 247 AGACGATCATGATCGAACCTGTGATCATTGCTTCTGGCCAGACTTTTGAAAAGAAACACA 306
| |||||||||||||| |||||||||||||||||||| ||||| | |||||||| | | |
Sbjct 245 ATACGATCATGATCGAGCCTGTGATCATTGCTTCTGGGCAGACGTATGAAAAGAGATATA 304
Query 307 TCACAAAGTGGCTGAAGCAT-AACACTACATGTCCCGAAACCAAAGC-AGTCCTCTCTCA 364
||||| |||||||||||||| ||| |||||||||| |||||||| | |||||| |||||
Sbjct 305 TCACAGAGTGGCTGAAGCATGAAC-GTACATGTCCCAAAACCAAA-CAAGTCCTTTCTCA 362
Query 365 CTTGTGTTT-GACACCCAACCATTCGATCAATGAGTTGATTACGCAATGGTGTCTCGTTA 423
| || ||| || ||| ||||||| ||||| ||| ||||||||||||||||| || ||||
Sbjct 363 C-CGTCTTTGGATACCAAACCATTTGATCAGTGACTTGATTACGCAATGGTGCCTTGTTA 421
Query 424 ACAAATATGATCGGCCAGACCCACAACCATCTGATGAAATAGTCATTGAGATGTTCACTG 483
|||||||||||| || | | |||||||||||||| ||||| |||| ||||||||
Sbjct 422 ACAAATATGATC-ATCA-A---A-AACCATCTGATGAATTAGTCGCTGAGCTGTTCACTA 475
Query 484 GTGACATCGAACCATTGCTTCACCGGATTTCCTCTCCCTCCTCGGTTGCAGATCAGATAG 543
||||||| ||| ||||||| || ||| |||||||| ||||||| ||||||||||||||||
Sbjct 476 GTGACATAGAAGCATTGCTACAGCGGGTTTCCTCTTCCTCCTCTGTTGCAGATCAGATAG 535
Query 544 AAGCTGCAAAAGAGCTTGCC-CTCCAGACCTCGAAATTTG-TCAATGT-CTGCGACTTCT 600
|||||||||||||||| || | ||||||| ||||||| | ||||| | | | |||||
Sbjct 536 AAGCTGCAAAAGAGCT-GCGTCACCAGACCAAGAAATTTCCT-AATGTTCGG-GTCTTCT 592
Query 601 TTGTCAA-GGAACTCTATGATTCGATCACTAGGTTGCTCACTCCGCTCTCTAACTTTGG- 658
||||| |||| || ||||||| ||||| | ||||||| ||||||||||| ||||||
Sbjct 593 TTGTCGCTGGAA-TCCATGATTCTATCACCCGTTTGCTCAGTCCGCTCTCTA-CTTTGGA 650
Query 659 CGATG-ACGTAGACTCGAATC-CTGAGCTTCAAGAGAATATCCTCACATCATTGTTGAAC 716
||| | | |||||||| | || | ||||||||||||||||| ||||| | ||||| |||
Sbjct 651 CGAGGCA-GTAGACTCTAGTCTC-GAGCTTCAAGAGAATATTGTCACAGCTTTGTTCAAC 708
Query 717 ATCTCGACTGTTGAGAA-AAGTCAAAAAA-TAATTGCTGAAAA-TCCTCTTGTGATCCCT 773
|||||| | |||||| || | |||| | | ||||||||||| | ||| |||||||||
Sbjct 709 CTCTCGATTCTTGAGAGTAA-T-AAAACAGTGATTGCTGAAAACTG-TCTAGTGATCCCT 765
Query 774 CTGCTTACAAAGTCTTTGAGG-AGGGGGACAGATCAAACAAAAACAGTCTCTGCAGCGAC 832
||||||||||||||||||| | ||||| |||||| | ||| || | | |||| |||||
Sbjct 766 CTGCTTACAAAGTCTTTGAAGCAGGGG-ACAGATGAGACACGAAGAAACGCTGCTGCGAC 824
Query 833 TTTAACGTCACTTTCAGGCATTGATTCTAACAAGATTATCATCGGGAACTCGGAAGCACT 892
|||| | |||||||||| |||||||||||||||||| || || |||||||||||||| |
Sbjct 825 TTTATCATCACTTTCAGCCATTGATTCTAACAAGATCATTATTGGGAACTCGGAAGCGGT 884
Query 893 CAAGGCTCTGATAGATCTAATCGGGGACTCGGATGACTTATCAGCAAC-AGGTGAAGCTG 951
|||||| |||| ||||| |||| || || ||| || | ||| || | |||||
Sbjct 885 AAAGGCTTTGATTGATCTTATCGAAGAG--GG-TGATTTGTTAGCTACCAAA-GAAGCCA 940
Query 952 GCTACG-CTGT-TTTAAACCTCTGT-TCTGATGAATCGGAGAACATGGAAAAGGC-GATT 1007
|| | |||| ||||| ||||||| | || | | | |||||||| || ||||| | ||
Sbjct 941 -CTTCCACTGTCTTTAA-CCTCTGTAT-TG-T-ACT-GGAGAACAAGGGAAAGGTTG-TT 993
Query 1008 TCAGAGGGTTTGATTC-TCGCAGTA-CTCAAAAAGATCCTAGCAGGAAGAAATGTAGA-G 1064
|||| ||||||||||| | || | | | |||||||||| ||||||||| ||||| || |
Sbjct 994 TCAGCGGGTTTGATTCAT-GCGGCAAC-CAAAAAGATCAAAGCAGGAAGCAATGTGGATG 1051
Query 1065 AATATGGTATCTATCTTGACATCGATTTCTACAAACAACCAGGTTAAGGAAAAAATAGAG 1124
| | || ||||| ||||| ||| ||| |||||| |||||| || | ||| |||| ||
Sbjct 1052 AGT-TGTTATCTCTCTTGGCATTGATATCTACACACAACCGGGCTGTTGAAGAAATGGAT 1110
Query 1125 GAACTAGGGATTGTGTGTGATATCTTAAAG-ATCTTGAGGAA-CACAAGCT-GCTTGATG 1181
|||||||| || | | |||| | || | | ||||||||||| | | || | ||||| ||
Sbjct 1111 AAACTAGGGTTTATCTATGATCTGTTCA-GTATCTTGAGGAAGC-CGAG-TAGCTTGCTG 1167
Query 1182 ACTGGTGAGAACGCTATAGAGGTCCTCTTCAAAATGTTTGATGGAATCAGAGACACGG-C 1240
||||||||||||||| ||| | || ||||||| |||| ||| ||| |||||||| || |
Sbjct 1168 ACTGGTGAGAACGCTGTAGTGATCGTCTTCAACATGTATGACAGAAACAGAGACA-GGTC 1226
Query 1241 TAGGCTGGGAATTC-TCCAAGAAGAGGAGCTTCTATACAAGACATTTACGAAGCTTGC-A 1298
|| ||| || | | |||||||||| || | || |||||||||||||||||| |
Sbjct 1227 CAGACTGA-AAGTGGTAGGAGAAGAGGAGAATCAACACGGGACATTTACGAAGCTTGCGA 1285
Query 1299 AGGCAAGGATCAGATCGTGCGGCGAGAAAAGCACAAGAGATTTTACAGTGGAT 1351
|| |||||||||| |||||| |||||||||||||||| ||| |||||||||||
Sbjct 1286 AG-CAAGGATCAGTTCGTGCAGCGAGAAAAGCACAAGGGATATTACAGTGGAT 1337
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70682367360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5