BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941368
Length=973
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18450.1 | Symbols: | Integrase-type DNA-binding superfamil... 1315 0.0
> AT5G18450.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr5:6116097-6117020 REVERSE LENGTH=924
Length=924
Score = 1315 bits (712), Expect = 0.0
Identities = 869/941 (92%), Gaps = 25/941 (3%)
Strand=Plus/Plus
Query 21 ATGGAAGAAGAGCAACCTCCGGCCAAGAAACGAAACATGGGAAGATCTAGAAAAGGTTGC 80
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGAAGAAGAGCAACCTCCGGCCAAGAAACGAAACATGGGGAGATCTAGAAAAGGTTGC 60
Query 81 ATGAAAGGTAAAGGCGGTCCAGAGAACGCCACGTGTACTTTCCGTGGAGTCAGGCAACGG 140
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 ATGAAAGGTAAAGGCGGTCCAGAGAACGCCACGTGTACTTTCCGTGGAGTTAGGCAACGG 120
Query 141 ACTTGGGGTAAATGGGTGGCTGAGATCCGTGAGCCTAACCGTGGGACTCGTCTCTGGCTC 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACTTGGGGTAAATGGGTGGCTGAGATCCGTGAGCCTAACCGTGGGACTCGTCTCTGGCTC 180
Query 201 GGCACGTTTAATACCTCAGTCGAAGCCGCCATGGCTTACGATGAAGCCGCTAAGAAACTC 260
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 GGCACGTTTAATACCTCGGTCGAGGCCGCCATGGCTTACGATGAAGCCGCTAAGAAACTC 240
Query 261 TATGGACACGAGGCTAAACTCAACTTGGTGCACCCACAATCACTACGACAACAACAACAA 320
|||||||||||||||||||||||||||||| | | | | | |||||||||||||
Sbjct 241 TATGGACACGAGGCTAAACTCAACTTGGTG------C-A-C-C--C-ACAACAACAACAA 288
Query 321 CAAGTAGTAGTGAACAGAAACTTGTCTTTTTC-GAGCCACGGGTCAGGTTCTTGGGC-T- 377
|||||||||||||||||||||||||||||||| | |||||||||| ||||||||||| |
Sbjct 289 CAAGTAGTAGTGAACAGAAACTTGTCTTTTTCTG-GCCACGGGTCGGGTTCTTGGGCTTA 347
Query 378 T-CT---AAGCTTGATACGGTTCCTGTGTTGGACCTTGGTCTCGGCCCGGCAAGTGGTTC 433
| | ||||| |||| ||||| || |||||||||||||||||||| ||||||| ||||
Sbjct 348 TAATAAGAAGCTCGATATGGTTCATGGGTTGGACCTTGGTCTCGGCCAGGCAAGTTGTTC 407
Query 434 ACGAGGTTCTTGGTCAGGGAGATCGAATTTTCTACAAGAAGACGATGATCATAAAT-ATA 492
|||||||||||| |||| |||||||| ||||||||||||||| ||||||||| | | |||
Sbjct 408 ACGAGGTTCTTGCTCAGAGAGATCGAGTTTTCTACAAGAAGATGATGATCAT-AGTCATA 466
Query 493 ATCGAAGACCGTCTTCAAGTGGTTCGAATCTTTGTTGGTTATTACCTAAACAAAGTGATT 552
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 ATCGATGTTCGTCTTCAAGTGGTTCGAATCTTTGTTGGTTATTACCTAAACAAAGTGATT 526
Query 553 CACAAGATCAAGAGACCGTTAATGCTGCGAGTGGTTGTGGCGTTGAAGGCGGTGGTGGCT 612
|||||||||||||||||||||||||| ||| | ||| ||||| |||||||||||||||||
Sbjct 527 CACAAGATCAAGAGACCGTTAATGCTACGACTAGTTATGGCGGTGAAGGCGGTGGTGGCT 586
Query 613 CTACGTTAACGTTTTCGACCAAGTTGAAACCGAAGAACTTGGTGGTGAGTCCGAATAATG 672
|||||||||||||||||||||| |||||||| ||||| || || |||||| |||| |||
Sbjct 587 CTACGTTAACGTTTTCGACCAATTTGAAACCAAAGAA-TT--TGATGAGTCAGAATTATG 643
Query 673 GATTATATAGTGGAGCTTGGTCTAGGTTTCTTGTGGGGCAAGAAAAGAAGACGGAACATG 732
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 GATTATACAATGGAGCTTGGTCTAGGTTTCTTGTGGGGCAAGAAAAGAAGACGGAACATG 703
Query 733 ACGTGTCATCGTCGTGTGGCTCATCTGATAATAAGGAGAGTATGGCGGTTCCTAGTGGCG 792
||||||||||||||||||| || || || || |||||||||||| |||||||||| |||
Sbjct 704 ACGTGTCATCGTCGTGTGGATCGTCGGACAACAAGGAGAGTATGTTGGTTCCTAGTTGCG 763
Query 793 GTGGAGAGAGAATGCATAGGCCGGAGGTGGAAGAGCGTACAGGGTATTTGGAAATGGATG 852
| |||||||| ||||||||||||||| |||||||||| ||||| ||||||||||||||||
Sbjct 764 GCGGAGAGAGGATGCATAGGCCGGAGTTGGAAGAGCGAACAGGATATTTGGAAATGGATG 823
Query 853 ATCTTTTGGAGATTGATGATTTGGGTTTGTTGATTGGCAAAAATGGAGATTTCAAGAATT 912
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 824 ATCTTTTGGAGATTGATGATTTAGGTTTGTTGATTGGCAAAAATGGAGATTTCAAGAATT 883
Query 913 GGTGTTGTGAGGAGTTTCAACATCCATGGAATTGGTTCTGA 953
|||||||||| ||||||||||||||||||||||||||||||
Sbjct 884 GGTGTTGTGAAGAGTTTCAACATCCATGGAATTGGTTCTGA 924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47621971356
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5