BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941373
Length=1703
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18490.1 | Symbols: | Plant protein of unknown function (DU... 2586 0.0
AT1G04090.1 | Symbols: | Plant protein of unknown function (DU... 84.2 4e-15
> AT5G18490.1 | Symbols: | Plant protein of unknown function (DUF946)
| chr5:6134152-6136765 REVERSE LENGTH=1996
Length=1996
Score = 2586 bits (1400), Expect = 0.0
Identities = 1601/1700 (94%), Gaps = 5/1700 (0%)
Strand=Plus/Plus
Query 7 TCTCGAAATC-AAACGATGTTTTGCGATTGCTTCTACTGGAACAAATCAATCACCGAGTT 65
|||||||||| ||||||||||||||||||||||||||||||| ||| || |||||||
Sbjct 196 TCTCGAAATCAAAACGATGTTTTGCGATTGCTTCTACTGGAATAAAGGTTTCTCCGAGTT 255
Query 66 GGAATCGGAATCGTCCGAGTCAAAGCCCTTCTCGCTTCCGTCTCCTCTTCCTCGATGGCC 125
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 256 GGAATCGGAATCGTCCGAGTCAAAGCCCTTCTCGCTTCCATCTCCTCTTCCTCAATGGCC 315
Query 126 ACAAGGCAGCGGTTTTGCTACTGGAAGGATAAATCTTGGAGAAATCCAAGTGGTGAAAGT 185
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 316 ACAAGGCAGAGGTTTTGCTACTGGAAGGATAAGTCTTGGAGAAATCCAAGTGGTGAAAGT 375
Query 186 CACCGAGTTCGATAGAGTTTGGAAATGTGGCAGGTCGCGTGGTAAATCGAGTTGCGCCTC 245
|||||||||||||||||||||||||||||||| ||||||||||||| || ||||| ||
Sbjct 376 CACCGAGTTCGATAGAGTTTGGAAATGTGGCACCTCGCGTGGTAAATTAAGATGCGCATC 435
Query 246 TTTTTACAAGCCCGTGGGGATACCAGAAGGTTTCCATTGCCTTGGTCATTACTGCCAGCC 305
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 TTTTTACAAACCTGTGGGGATACCAGAAGGTTTCCATTGCCTTGGTCATTACTGCCAGCC 495
Query 306 AAACAATCAGCCATTGAGAGGCTTCGTTCTTGCAGCTCGGGCTAACGAGCCCGGTCATCT 365
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 496 AAACAATCAGCCATTGAGAGGCTTTGTTCTTGCAGCTCGGGCTAACAAGCCCGGTCATCT 555
Query 366 TGCGGATGAGCATCGCCCTCCCTTGAAAAAACCTGTGAATTATTCTTTAGTTTGTAGTTC 425
|||||||| ||||||||||| |||||||| ||| ||||||||||||||||||| |||||
Sbjct 556 AGCGGATGATCATCGCCCTCCTTTGAAAAAGCCTTTGAATTATTCTTTAGTTTGGAGTTC 615
Query 426 AGATTCAGATTGCTACTTCTGGTTACCTAATCCTCCGGTTGGTTATAGAGCCGTGGGAGT 485
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 616 AGATTCAGATTGCTACTTCTGGTTACCTAATCCTCCTGTTGGTTATAGAGCCGTGGGAGT 675
Query 486 TATTGTCACTGATGGATCAGAGGAGCCTGAAGTTGATGAAGTGAGATGTGTAAGAGAGGA 545
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 676 TATTGTCACTGATGGATCAGAGGAGCCTGAAGTTGATGAAGTGAGATGTGTACGAGAGGA 735
Query 546 TCTTACGGAGAGTTGTGAAACCGGTGAGAAGGTTCTTGGCATGGGATCTTTTAATGTCTG 605
|||||| ||||| |||||||||||||||||||||||||| | |||||||||||||| ||
Sbjct 736 TCTTACAGAGAGCTGTGAAACCGGTGAGAAGGTTCTTGGTGTAGGATCTTTTAATGTTTG 795
Query 606 GAGCACTAAACCATGCGAGACG-GGTATTTGGTCTCGGGGAGTGGAGGTTGGGTCATTCT 664
|||||||||||| ||||||| | |||||||||||||| |||||||||||||||||||||
Sbjct 796 GAGCACTAAACCTTGCGAGA-GAGGTATTTGGTCTCGTGGAGTGGAGGTTGGGTCATTCG 854
Query 665 TTTGCTCTACTAATGATATGTCTTCTAATTATAAAGCCGCCATGAAGATTGCGTGTTTGA 724
||||||||||||||||| |||||||| || |||||||||||||||| |||||||||||||
Sbjct 855 TTTGCTCTACTAATGATCTGTCTTCTGATAATAAAGCCGCCATGAACATTGCGTGTTTGA 914
Query 725 AAAATCTCGATCCGAGCCTACATGGCATGCCAAATCCTGACCAGGTCCATGCACTTATTC 784
|||||||||| ||||||||||| || |||||||||| ||| |||||||||||||||||||
Sbjct 915 AAAATCTCGACCCGAGCCTACAAGGTATGCCAAATCTTGATCAGGTCCATGCACTTATTC 974
Query 785 AGCATTATGGACCGATAGTCTACTTCCATCCCGAAGAGACTTACATGCCTTCGTCCGTGC 844
| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 975 ACCATTATGGACCGATGGTCTACTTCCATCCCGAAGAGACTTACATGCCTTCGTCTGTGC 1034
Query 845 CATGGTTCTTTAAAAACGGAGCTTTGTTGTACCGGTCTGGGAAATCGCAAGGCGAACCGA 904
||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||
Sbjct 1035 CATGGTTCTTTAAAAACGGAGCTTTGTTGCACCGGTTTGGGAAATCTCAAGGCGAACCGA 1094
Query 905 TTAACTATA-CTGGCTCGAACTTGCCTGCGGGTGGAGAAAACGATGGGAGCTTCTGGATT 963
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1095 TTAACT-CAGCTGGCTCGAACTTGCCTGCGGGTGGAGAAAACGATGGGAGCTTCTGGATT 1153
Query 964 GATCTCCCTGAAGATGAAGAAGTTAGAAGTAATCTAAAGAAGGGAAATATAGAAAGCTCA 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1154 GATCTCCCTGAAGATGAAGAAGTTAGAAGTAATCTAAAGAAGGGAAATATAGAAAGCTCA 1213
Query 1024 GAGCTTTATGTCCACGTGAAACCAGCACTTGGCGGGATTTTCACAGACATTGTGATGTGG 1083
|||||||| |||||||||||||| || ||||||||||||||||| ||| |||| ||||||
Sbjct 1214 GAGCTTTACGTCCACGTGAAACCCGCGCTTGGCGGGATTTTCACGGACGTTGTAATGTGG 1273
Query 1084 ATTTTCTGTCCATTTAATGGCCCAGCCACTCTCAAAATCGGGCTTCTCACCGTACCCATG 1143
|| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct 1274 ATATTCTGTCCATTTAATGGTCCAGCCACTCTCAAAATCGGGCTTCTCACGGTACCAATG 1333
Query 1144 AACCGCATTGGAGAGCATGTTGGTGATTGGGAACACTTCACATTCAGGATAAGCAATTTC 1203
|||||| |||||||||||||||||||||||||||| ||||||||| |||||||||| |||
Sbjct 1334 AACCGCCTTGGAGAGCATGTTGGTGATTGGGAACATTTCACATTCCGGATAAGCAACTTC 1393
Query 1204 AACGGCGAGCTTACACAAATGTTCTTCTCACAACATAGCGGTGGAGGATGGGTTGATGTA 1263
|||||||| |||||||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1394 AACGGCGATCTTACACAGATGTTCTTCTCACAGCATAGTGGTGGAGGATGGGTTGATGTA 1453
Query 1264 TCGGATCTTGAGTTTGTCAAAGGAAGCAACAAACCGGTTGTGTACTCATCCAAACACGGC 1323
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1454 TCGGATCTTGAGTTTGTCAAAGGAAGCAATAAACCGGTTGTGTACTCATCCAAACACGGT 1513
Query 1324 CACGCGAGTTTCCCACACCCCGGAATGTACCTTCAAGGCCCGTCGAAGCTCGGGATTGGA 1383
||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1514 CACGCTAGTTTCCCACACCCGGGAATGTATCTTCAAGGCCCGTCGAAGCTCGGGATTGGA 1573
Query 1384 GTGAGAAACGATGTTGCGAAAAGCAAGTATGCGGTGGATTCTAGTCAAAGATATAGAATC 1443
|| ||||||||||||||||||||||||||| |||||||||||||||||| || ||||||
Sbjct 1574 GTAAGAAACGATGTTGCGAAAAGCAAGTATATGGTGGATTCTAGTCAAAGGTACAGAATC 1633
Query 1444 GTGGCAGCGGAGTATTTAGGCGAAGGAGCGGTTTCAGAACCGTGCTGGCTGCAGTTCATG 1503
|| ||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1634 GTAGCAGCAGAGTATTTAGGCGAAGGAGCGGTTTCAGAACCGTACTGGCTGCAGTTTATG 1693
Query 1504 AGAGAATGGGGACCAACTATAGTGTACGATTCTGCAGCTGAGATCAATAAGATCATTGAT 1563
||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||
Sbjct 1694 AGAGAATGGGGACCAACTATAGTATATGATTCAGCAGCTGAGATCAATAAGATCATTGAT 1753
Query 1564 CTTCTTCCATTGATTGTGAGGTATTCTTTTGAGAGTCTGTTTCCTATTGAGCTTTACGGC 1623
|| |||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1754 CTACTTCCACTGATTCTGAGGAATTCTTTTGAGAGTCTGTTTCCTATTGAGCTTTACGGT 1813
Query 1624 GAGGAAGGTCCTACAGGACCAAAGGAGAAGGATAATTGGGAAGGAGATGAAATGTGTTGA 1683
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1814 GAGGAAGGTCCTACAGGACCAAAGGAGAAGGATAATTGGGAAGGAGATGAAATTTGTTGA 1873
Query 1684 AAACAGAGCTCCTCTGTTTC 1703
||||||||||||||||||||
Sbjct 1874 AAACAGAGCTCCTCTGTTTC 1893
> AT1G04090.1 | Symbols: | Plant protein of unknown function (DUF946)
| chr1:1057151-1059419 FORWARD LENGTH=1965
Length=1965
Score = 84.2 bits (45), Expect = 4e-15
Identities = 60/67 (90%), Gaps = 2/67 (3%)
Strand=Plus/Plus
Query 1620 CGGCGAGGAAGGTCCTACAGGACCAAAGGAGAAGGATAATTGGGAAGGAGATGAAATG-T 1678
|||||||||||||||||||||||||||||||||| | |||||| | || ||||||| | |
Sbjct 1730 CGGCGAGGAAGGTCCTACAGGACCAAAGGAGAAGAACAATTGGTATGGCGATGAAA-GAT 1788
Query 1679 GTTGAAA 1685
|||||||
Sbjct 1789 GTTGAAA 1795
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84186313965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5