BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941374
Length=1496
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18500.1 | Symbols: | Protein kinase superfamily protein | ... 2453 0.0
> AT5G18500.1 | Symbols: | Protein kinase superfamily protein
| chr5:6138489-6141630 FORWARD LENGTH=2007
Length=2007
Score = 2453 bits (1328), Expect = 0.0
Identities = 1440/1496 (96%), Gaps = 0/1496 (0%)
Strand=Plus/Plus
Query 1 AATAAAGCGGAGGTCATAAGATGGGTTCTGGTTTAAACGACACATTATCTCGGAACTACA 60
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 186 AATAAAGCGGAGGTCAGAAGATGGGTTCTGGTTTAAATGACACATTATCTCGGAACTACA 245
Query 61 ATGGTTTGGAGCTATGGGAGATAATAGTGATCGTTCTCTCCGCGATATTCGTTGTAGTTT 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 246 ATGGTTTGGAGCTATGGGAGATAATAGTGATTGTTCTCTCCGCGATATTCGTTGTAGTTT 305
Query 121 TAGCTATATCGCTTTGGCTTACTTTCAGGAGAAAAACCTCTAGATCTTCTTCTAATCTAA 180
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 306 TAGCTATATCGCTATGGCTTACTTTCAGAAGAAAAACCTCTAGATCTTCTTCTAATCTAA 365
Query 181 TCCCTGTTAGTCGCCAGGTTCCTCCTAGTGTTCCTGAAGAGATAAAAGAGATTAGAGTTG 240
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
Sbjct 366 TCCCTGTTAGTCGCCAGATTCCTCCTAGTGTTCCTGAAGAGATTAAAGAGATTAGAGTCG 425
Query 241 ACGAGGTTTCTTCAAGCAATGGTGGCAATGGATATCCCTCTATTAGTGAGAAATTTGGCG 300
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 426 ACGAGGTTTCTTCAAGCAATGGTGGGAATGGATACCCCTCTATTAGTGAGAAATTTGGCG 485
Query 301 ATAAAGAACCTGAAAAGGGGATAAAAGCAGAGTCAGAAAATGGCGATAGTAGCCGGTCTG 360
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 486 ATAAAGAACCCGAAAAAGGGATAAAAGCAGAGTCAGAAAATGGCGATAGTAGCCGGTCAG 545
Query 361 GCTCGTTTAATCACTTGGAGAAAAAAGATGGATCAAGCGTATCTTCTGCTAATCCTTTGA 420
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 546 GCTCGTTTAATCACTTGGAGAAAAAAGACGGATCGAGCGTATCTTCTGCTAATCCTTTGA 605
Query 421 CAGCTCCATCTCCTTTGTCTGGCCTTCCTGAGTTTTCTCACCTCGGATGGGGACATTGGT 480
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 606 CAGCTCCATCTCCTTTGTCTGGTCTTCCTGAGTTTTCTCACCTTGGATGGGGACATTGGT 665
Query 481 TCACTCTTAGAGATCTTCAGATGGCTACTAATCAGTTTTCGAGGGATAATATAATCGGTG 540
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 666 TCACTCTTAGAGATCTTCAGATGGCTACTAATCAGTTTTCAAGGGATAATATCATCGGTG 725
Query 541 ATGGTGGATATGGAGTTGTTTATCGTGGTAACCTTGTTAATGGTACTCCTGTTGCTGTTA 600
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 726 ATGGTGGATATGGAGTTGTTTACCGCGGTAACCTTGTTAATGGTACTCCTGTTGCTGTTA 785
Query 601 AAAAGTTGCTCAACAATTTAGGGCAAGCTGACAAAGACTTCAGAGTAGAAGTTGAAGCTA 660
|||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 786 AAAAGTTGCTCAACAATTTAGGACAAGCTGATAAAGACTTCAGAGTTGAAGTTGAAGCTA 845
Query 661 TAGGTCATGTTCGCCACAAAAATTTGGTGCGCCTTCTTGGATATTGCATGGAAGGAACAC 720
||||||| ||||| || ||||| ||||| |||||||| |||||||| ||||||||||| |
Sbjct 846 TAGGTCACGTTCGACATAAAAACTTGGTCCGCCTTCTCGGATATTGTATGGAAGGAACGC 905
Query 721 AGAGGATGCTGGTGTATGAGTATGTTAACAATGGAAATTTGGAGCAATGGCTCCGTGGAG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 AGAGGATGCTGGTGTATGAGTATGTTAACAATGGAAATTTGGAGCAATGGCTCCGTGGAG 965
Query 781 ACAATCAAAACCATGAGTATCTTACATGGGAGGCACGAGTGAAAATTCTTATTGGAACAG 840
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 966 ACAATCAAAATCATGAGTATCTTACATGGGAGGCACGAGTGAAAATTCTTATTGGGACAG 1025
Query 841 CCAAAGCGCTCGCGTATCTTCACGAGGCGATTGAGCCAAAAGTGGTGCACAGAGACATTA 900
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 CCAAAGCGCTCGCGTACCTTCACGAGGCGATTGAGCCAAAAGTGGTGCACAGAGACATTA 1085
Query 901 AGTCTAGCAACATTCTGATTGATGACAAATTCAATTCTAAAATTTCTGACTTTGGACTTG 960
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 AGTCTAGTAACATTCTGATTGATGACAAATTCAATTCTAAAATTTCTGACTTTGGACTTG 1145
Query 961 CTAAACTACTTGGTGCTGATAAGAGTTTTATAACTACTAGAGTTATGGGTACCTTTGGTT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1146 CTAAACTACTTGGTGCTGATAAGAGTTTTATAACTACTAGAGTTATGGGTACCTTCGGTT 1205
Query 1021 ATGTAGCTCCAGAGTATGCGAATTCCGGTCTTCTGAATGAGAAAAGTGATGTCTACAGCT 1080
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1206 ACGTAGCTCCAGAGTATGCGAATTCCGGTCTTCTGAATGAGAAAAGCGATGTCTACAGCT 1265
Query 1081 TCGGGGTTGTACTCTTGGAAGCTATAACTGGTAGATATCCGGTAGATTATGCTCGTCCAC 1140
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1266 TCGGGGTTGTACTCTTGGAAGCTATAACTGGTAGATATCCGGTAGACTATGCTCGTCCAC 1325
Query 1141 CACCCGAGGTACATTTGGTGGAGTGGCTGAAGATGATGGTCCAACAAAGACGATCAGAAG 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 CACCCGAGGTACATTTGGTGGAGTGGCTGAAGATGATGGTCCAACAAAGACGATCAGAAG 1385
Query 1201 AAGTGATTGACCCAAACCTTGAAACAAAACCATCTACAAGTGCTTTAAAAAGAACACTCT 1260
||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1386 AAGTGGTTGATCCAAACCTTGAAACAAAACCATCTACAAGTGCTTTGAAAAGAACACTAT 1445
Query 1261 TGACTGCTCTAAGATGTGTTGATCCAATGTCTGAGAAACGACCAAGGATGAGCCAAGTTG 1320
|||||||| | ||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1446 TGACTGCTTTGAGATGTGTTGATCCAATGTCTGAGAAAAGACCGAGGATGAGCCAAGTTG 1505
Query 1321 CCCGTATGCTTGAATCCGAAGAATACCCAATTCCTAGAGAGGATAGGAGAAGAAGAAGGG 1380
| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1506 CACGTATGCTTGAATCCGAAGAATACCCAATTGCTAGAGAGGATAGGAGAAGACGAAGGA 1565
Query 1381 GTCAGAACGGGACAACAAGAGATTCAGATCCTCCTAGGAACAGCACAGACACTGACAAGA 1440
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1566 GTCAGAACGGGACAACAAGAGATTCAGATCCTCCGAGGAACAGCACAGACACTGACAAGA 1625
Query 1441 GTGAGTACCATGACCTAAAGCCTGAAGGTGGGTAGCCACTGGAAATAATCGAGGTG 1496
||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||
Sbjct 1626 GTGAGTACCATGACCTAAAGCCTGAAGGTGGATAGCCATTGGAAATAATGGAGGTG 1681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73794801150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5