BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941384
Length=1484
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18580.1 | Symbols: FASS, TON2, EMB40, FS1, GDO, FASS 2 | to... 2514 0.0
> AT5G18580.1 | Symbols: FASS, TON2, EMB40, FS1, GDO, FASS 2 |
tonneau 2 (TON2) | chr5:6174996-6178401 FORWARD LENGTH=1788
Length=1788
Score = 2514 bits (1361), Expect = 0.0
Identities = 1444/1485 (97%), Gaps = 2/1485 (0%)
Strand=Plus/Plus
Query 1 GGTTGTGACGATCTCCGAAAATGTATAGCGGATCTAGCGATGGTGAGAGTCATGATACAT 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 139 GGTTGTGACGATCTCCGAGAATGTATAGCGGATCTAGCGATGGTGAGAGTCATGATACAT 198
Query 61 CGACGCAGAGGAAGATTCCACCGGCGTCTTCGATGCTTTGGGTCAGAAATCTACGGCGGT 120
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || |
Sbjct 199 CGACGCAGAGGAAGATCCCACCGGCGTCTTCGATGCTTTGGGTTAGAAATCTACGACGAT 258
Query 121 ATATTGGTTCCGGTGCCGGATTAGGATCCGAAGCTCTAATGGAGCTTGAGACGAAGAGAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 ATATTGGTTCCGGTGCCGGATTAGGATCCGAAGCTCTAATGGAGCTTGAGACGAAGAGAA 318
Query 181 TCTTGCTTGAGATATTTAAAGAGAAGCAACAGAAAAGTCAAGAAGCAGGCACTATACCGA 240
||||||| ||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 319 TCTTGCTCGAGATTTTTAAAGAGAAGCAACAGAAAAGCCAAGAAGCAGGCACAATACCGA 378
Query 241 GCTTCTACAAGAAGAAACCAGAAGAAGGATCTATTAGTCAAAGGGTCCAGAGGCTTGCAA 300
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 379 GTTTCTACAAGAAGAAACCAGAAGAAGGATCTATTAGTCAAAGGGTCCAGAAGCTTGCAA 438
Query 301 AATACCGTTTCTTGAAGAAACAATCGGATCTTTTGTTAAACGCTGATGATTTGGCTGCTA 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 AGTACCGTTTCTTGAAGAAACAATCGGATCTTTTGTTAAACGCTGATGATTTGGCTGCTA 498
Query 361 TGTGGGTTTGTTTGAGAGAGAATTGTGTTATTGATGATGCCACTGGTGCAGAAAAGATGA 420
||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 499 TGTGGGTTTGTTTGAGAGAAAATTGTGTGATTGATGATGCCACTGGTGCTGAAAAGATGA 558
Query 421 ACTATGAAGACTTCTGTCACATTGCCTCTGTATGTACTGAACAAATCGGTCCCAAATGTC 480
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 559 ACTATGAAGACTTCTGTCACATTGCCTCTGTATGCACTGAACAAATCGGTCCCAAATGTC 618
Query 481 GCCGGTTTTTTAGCCCTTCCAATTTCATGAAATTTGAGAAGGATGAGGCTGGGAGGATTG 540
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 GCCGGTTTTTTAGCCCATCCAATTTCATGAAATTTGAGAAGGATGAGGCTGGGAGGATTG 678
Query 541 CCATTTTACCATTTTATCTTTATGTGATGCGCACGGTGTCGCTTACACAAGCTAGGATTG 600
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 CCATTTTACCGTTTTATCTTTATGTGATGCGCACGGTGTCGCTTACACAAGCTAGGATTG 738
Query 601 ATATGAGTGAGCTTGACGAAGACTCTGATGGTTTCCTTCAATCTCATGAAATGGAGGCCT 660
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||
Sbjct 739 ATATGAGTGAGCTTGACGAAGACTCTGATGGTTTCCTTCATTCTGATGAAATGGAGTCCT 798
Query 661 ATATTGGTGGTCTAATCCCTAATCTGGCACAACTGAGGGACATGCCTCCGGCCTTTAATC 720
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 799 ATATTGGTGGTCTAATCCCTAATCTGGCACAACTGAGAGACATGCCTCCGGCCTTTAATC 858
Query 721 AAATGTATTGCCGCATAGCTTCACAAAAGTTTTTCTTCTTCTGTGATCCCCATAGGCGAG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 AAATGTATTGCCGCATAGCTTCACAAAAGTTTTTCTTCTTCTGTGATCCCCATAGGCGAG 918
Query 781 GAAAAGCCTGCATTAAAAAGATACTGCTCAGTAACTGTCTGCAGGAACTAATGGAATTGC 840
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 GAAGAGCCTGCATTAAAAAGATACTGCTCAGTAACTGTCTGCAGGAACTAATGGAATTGC 978
Query 841 ATCAGGAAAGCGAGGAGGAAGTGACAGACACTGAACAGGCAGAAAATTGGTTCTCTTTGA 900
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 979 ATCAGGAAAGCGAGGAGGAAGTCACAGACACTGAACAGGCAGAAAATTGGTTCTCTTTGA 1038
Query 901 CTTCAGCTCAACGCATATGTGATATGTTCCTCGCACTTGATAAAGATATGAGTGGATCGC 960
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1039 CTTCAGCCCAACGCATATGTGATATGTTCCTCGCACTTGATAAAGATATGAGTGGATCGC 1098
Query 961 TGTGCAAACAAGAACTCAAAGAATATGCTGATGGGACCCTAACTGAGATTTTCATTGAAA 1020
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1099 TGTGCAAACAAGAACTTAAAGAATATGCTGATGGGACCCTAACTGAGATTTTCATTGAAA 1158
Query 1021 GAGTGTTTGATGAGCATGTTCGGCGTGGTAAAAGCG-GCTCAGGCAATTCCCGGGAAATG 1079
||||||| ||||||||||| || |||||||||| || | ||||||||||||||||||||
Sbjct 1159 GAGTGTTCGATGAGCATGTCCGCCGTGGTAAAATCGTG-GCAGGCAATTCCCGGGAAATG 1217
Query 1080 GACTTTGACAGTTTCCTCGATTTTGTTCTTGCTTTGGAGAACAAAGACACTCCAGAGGGT 1139
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1218 GACTTTGACAGTTTCCTCGATTTTGTTCTTGCTTTGGAGAACAAAGATACTCCAGAGGGT 1277
Query 1140 TTAACATATTTATTCCGTTGTCTTGATCTCCAAGGGAGAGGCTTTCTCACTACTGCTGAT 1199
|| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1278 TTGACGTATTTATTCCGTTGCCTTGATCTCCAAGGGAGAGGCTTTCTCACTACTGCTGAT 1337
Query 1200 ATTCACTCTCTTTTCAGAGATGTTCACCAGAAATGGATAGAAGGTGGGAACTATGAACTG 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1338 ATTCACTCTCTTTTCAGAGATGTTCACCAGAAATGGATAGAAGGTGGGAACTATGAACTG 1397
Query 1260 TGCATAGAGGATGTTCGGGACGAGATCTGGGACATGGTGAAACCGTCTGACCCATTAAAG 1319
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1398 TGCATAGAAGATGTTCGAGACGAGATCTGGGACATGGTGAAACCGTCTGACCCATTAAAG 1457
Query 1320 ATCACCCTGGGTGATCTCTTGGGATGTAAACAAGGTGGAACCGTTGCGAGCATGCTTATA 1379
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1458 ATCACTCTGGGTGATCTCTTGGGATGTAAACAAGGTGGAACCGTTGCGAGCATGCTTATA 1517
Query 1380 GATGTGCGTGGCTTCTGGGCTCATGACAACCGTGAGAACCTTCTTCAAGAAGAAGAAGAA 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1518 GATGTGCGTGGCTTCTGGGCTCATGACAACCGTGAGAACCTTCTTCAAGAAGAAGAAGAA 1577
Query 1440 CCACCTGAGGAAGAGTCTCAGTGATAATGTTATTTTCTTTGTCTA 1484
|||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1578 CCACCTGAGGAAGAGTCTCAGTGATAATGTTATTTTCTATGTCTA 1622
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73192394610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5