BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941387
Length=1585
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18610.1 | Symbols: | Protein kinase superfamily protein | ... 2712 0.0
> AT5G18610.1 | Symbols: | Protein kinase superfamily protein
| chr5:6192443-6195753 FORWARD LENGTH=2005
Length=2005
Score = 2712 bits (1468), Expect = 0.0
Identities = 1544/1582 (98%), Gaps = 0/1582 (0%)
Strand=Plus/Plus
Query 1 CGAGGGACTTAGCTTCGGAGATGAGTGGGTGTTTGCCTTGCTTTGGATCTTCGGCTAAAG 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 62 CGAGGGACTTAGCTTCGGAGATGAGTGGGTGTTTGCCTTGTTTTGGATCTTCGGCTAAAG 121
Query 61 ACGCTGCTTCTAAAGATTCTGTGAAGAAGGAACTTTCAGCTAAAGACGGCTCTGTTACTC 120
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 122 ACGCTGCTTCTAAAGATTCGGTGAAGAAGGAACTTTCAGCTAAAGACGGCTCAGTTACTC 181
Query 121 AGTCTCACCATATCAGCTTAGATAAATCAAAGTCGCGACGAGGTCCTGAACAGAAGAAGG 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 182 AGTCTCACCATATCAGCTTAGATAAATCAAAGTCTCGACGAGGTCCTGAACAGAAGAAGG 241
Query 181 AGCTAACTGCTCCAAAAGAAGGGCCTACCGCGCATATCGCTGCACAAACGTTTACTTTCC 240
|||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 242 AGCTAACTGCTCCAAAAGAAGGGCCTACTGCGCATATTGCTGCACAAACCTTTACTTTCC 301
Query 241 GAGAGTTAGCTGCTGCCACTAAAAACTTTCGACCGGAATGTCTTCTTGGAGAAGGAGGTT 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 GAGAGTTAGCTGCCGCCACTAAAAACTTTCGACCGGAATGTCTTCTTGGAGAAGGAGGTT 361
Query 301 TCGGACGTGTTTACAAGGGTCGTCTAGAGACCACAGGACAGATAGTAGCTGTTAAACAGC 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 TCGGACGTGTTTACAAAGGTCGTCTAGAGACCACAGGACAGATAGTAGCTGTTAAACAGC 421
Query 361 TTGATCGAAACGGTCTACAAGGAAACAGAGAGTTTCTTGTAGAAGTTCTTATGCTGAGCC 420
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 422 TTGATCGAAACGGTCTACAAGGAAACAGAGAGTTTCTTGTAGAGGTTCTTATGCTGAGCC 481
Query 421 TTCTGCATCATCCCAATCTTGTGAATTTGATTGGTTATTGTGCTGATGGTGACCAGCGTC 480
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 482 TTCTGCATCATCCCAATCTTGTGAATTTGATTGGTTATTGTGCTGATGGGGACCAGCGTC 541
Query 481 TTCTTGTGTATGAGTATATGCCACTAGGATCATTGGAGGATCATCTACACGATCTTCCAC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 TTCTTGTGTATGAGTATATGCCACTAGGATCATTGGAGGATCATCTACACGATCTTCCAC 601
Query 541 CTGATAAAGAGCCTCTAGACTGGAGTACTAGAATGACAATAGCGGCAGGAGCAGCAAAGG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 CTGATAAAGAGCCTCTAGACTGGAGTACTAGAATGACAATAGCGGCAGGAGCAGCAAAGG 661
Query 601 GACTGGAGTATTTGCATGATAAAGCGAACCCGCCTGTGATCTACAGAGACCTGAAATCAT 660
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 662 GACTGGAGTATCTGCATGATAAAGCGAATCCGCCTGTGATCTACAGAGACCTGAAATCAT 721
Query 661 CCAACATTCTTCTTGGTGATGGTTATCACCCAAAGTTATCTGATTTCGGGTTAGCTAAGT 720
||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 722 CCAACATTCTTCTCGGTGATGGCTATCACCCAAAGTTATCTGATTTTGGGTTAGCTAAGT 781
Query 721 TAGGTCCCGTGGGCGATAAAACACACGTGTCAACTCGTGTGATGGGCACATATGGTTATT 780
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 782 TAGGTCCCGTGGGCGATAAAACACATGTGTCAACTCGTGTGATGGGCACATATGGTTATT 841
Query 781 GTGCACCGGAATATGCCATGACCGGGCAACTCACATTGAAATCCGATGTTTATAGCTTTG 840
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 842 GTGCACCGGAATATGCCATGACAGGGCAACTCACATTGAAATCCGATGTTTATAGCTTTG 901
Query 841 GCGTTGTGTTTCTTGAGCTCATCACGGGTCGAAAAGCTATTGATAATGCTCGAGCACCCG 900
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 GGGTTGTGTTTCTCGAGCTCATCACGGGTCGAAAAGCTATTGATAATGCTCGAGCACCCG 961
Query 901 GAGAGCACAACCTTGTCGCATGGGCTAGGCCGTTGTTCAAAGATCGTAGAAAGTTCCCGA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 962 GAGAGCACAACCTTGTCGCATGGGCTAGGCCGTTGTTCAAAGATCGTAGAAAGTTTCCGA 1021
Query 961 AGATGGCGGATCCATCACTGCAAGGGCGGTACCCAATGCGTGGTCTATATCAAGCACTTG 1020
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1022 AGATGGCGGATCCATCGCTGCAAGGGCGGTATCCAATGCGTGGTCTATATCAAGCACTTG 1081
Query 1021 CAGTTGCAGCAATGTGTTTACAGGAACAAGCAGCGACAAGACCGCTGATTGGCGACGTGG 1080
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1082 CAGTTGCAGCAATGTGTTTACAGGAACAAGCAGCGACAAGACCACTGATTGGCGACGTGG 1141
Query 1081 TGACAGCTCTAACTTACTTAGCTTCGCAAACGTTTGACCCAAACGCACCAAGCGGTCAAA 1140
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 TGACAGCTCTAACATACTTAGCTTCGCAAACGTTTGACCCAAACGCACCAAGCGGTCAAA 1201
Query 1141 ACAGTAGAAGCGGTAGCGGGCCGCCATTTATCAGAACGAGGGATGATCGGAGGAGCTTGG 1200
|||||||||| || || ||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1202 ACAGTAGAAGTGGGAGTGGGCCACCATTTATCAGAACAAGGGATGATCGGAGGAGCTTGG 1261
Query 1201 GAGATGGGAGTAGCTTGGATAGTCCTGCAGAGACTCGGAGTCGGTTAGGGTCACCAGCGA 1260
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1262 GAGATGGGAGTAGCTTGGATAGTCCTGCAGAGACTCGGAGTCGGTTAGGGTCACCAGCCA 1321
Query 1261 CTCACAAGAACTCTCCTGATTACAGAAGAAGGGATATGGTGAGGGAAGTCAATGCAGGAA 1320
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 CTCACAAGAACTCTCCTGATTACAGAAGAAGGGATATGGTGAGGGAAGTCAATGCAGGAT 1381
Query 1321 CAGAAGGTGGAAGCGGGTCAGGAGGCGGGTCAGGGAGAAAATGGGGATTAAGCGATTTGG 1380
|||||||||| |||| | |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1382 CAGAAGGTGGGAGCGAGACAGGAGGCGGGTCAGGTAGAAAATGGGGATTAAGCGATTTGG 1441
Query 1381 AAGGGCAAGAATCACAGAGAGGGAGCCCGGCGAGTGTTGGGAGATCATCGAGAGGCACTC 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1442 AAGGGCAAGAATCACAGAGAGGGAGCCCGGCGAGTGTTGGGAGATCATCGAGAGGCACTC 1501
Query 1441 CAAGGAACCGAGATTTAGATAGAGAGAGGGCGGTGGCGGAAGCAAAGGTGTGGGGAGAGA 1500
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1502 CGAGGAACCGAGATTTAGATAGAGAGAGGGCGGTGGCGGAAGCAAAGGTGTGGGGAGAGA 1561
Query 1501 ATTGGAGGGAGAGGAAGAGAGCTACCAATGGACCGGGCAGCTTTGATAGTACAAATGACT 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1562 ATTGGAGGGAGAGGAAGAGAGCTACCAATGGACCGGGCAGCTTTGATAGTACAAATGACT 1621
Query 1561 GAAATGGGAAAGAGGAAAGCTT 1582
||||||||||||| ||||||||
Sbjct 1622 GAAATGGGAAAGATGAAAGCTT 1643
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78262649655
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5