BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941391
Length=1142
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18650.1 | Symbols: | CHY-type/CTCHY-type/RING-type Zinc fi... 1875 0.0
> AT5G18650.1 | Symbols: | CHY-type/CTCHY-type/RING-type Zinc
finger protein | chr5:6217912-6220702 FORWARD LENGTH=1480
Length=1480
Score = 1875 bits (1015), Expect = 0.0
Identities = 1102/1142 (96%), Gaps = 14/1142 (1%)
Strand=Plus/Plus
Query 1 GCTTTTCTCCTCCTGTTCTCATGGAAGCTTCACCCAATGATCGACTTCATTTTGGCAAAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 GCTTTTCTCCTCCTGTTCTCATGGAAGCTTCACCCAATGATCGACTTCATTTTGGCAAAA 388
Query 61 TGGGTTTCGGGTGTAAGCATTACAAGAGGAGATGCCAAATCAGAGCTCCATGTTGCAACG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 389 TGGGTTTCGGGTGTAAGCATTACAAGAGGAGATGCCAAATCAGAGCTCCATGTTGCAACG 448
Query 121 AAGTCTTCGATTGTCGCCATTGTCACAACGAGAGCACTAGCACATTGCGCAATATCTACG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 449 AAGTCTTCGATTGTCGCCATTGTCACAACGAGAGCACTAGCACATTGCGCAATATCTACG 508
Query 181 ACCGTCACGATCTTGTTCGTCAAGACGTTAAACAAGTGATTTGTTCTGTTTGCGATACAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 ACCGTCACGATCTTGTTCGTCAAGACGTTAAACAAGTGATTTGTTCTGTTTGCGATACAG 568
Query 241 AGCAGCCGGTAGCTCAAGTTTGTTCGAATTGTGGTGTCAACATGGGAGAATATTTTTGCA 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 AGCAGCCGGCAGCTCAAGTTTGTTCGAATTGTGGTGTCAACATGGGAGAATATTTTTGCA 628
Query 301 ACATCTGCAAATTCTATGATGATGATACTGAAAAACAACAGTTCCATTGCGATGAGTGTG 360
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 629 GCATCTGCATATTCTATGATGATGATACTGAAAAACAACAGTTTCATTGCGATGACTGTG 688
Query 361 GAATTTGCAGAGTTGGTGGGCGTGAGAATTTCTTCCATTGCAAGAAGTGTGGATCTTGTT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 GAATTTGCAGAGTTGGTGGGCGTGAGAATTTCTTCCATTGCAAGAAGTGTGGATCTTGTT 748
Query 421 ATGCGGTTGGTCTGCGCAACAACCATCGCTGCGTTGAGAATTCAATGCGTCATCACTGTC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 ATGCGGTTGGTCTGCGCAACAACCATCGCTGCGTTGAGAATTCAATGCGTCATCACTGTC 808
Query 481 CCATTTGTTACGAGTACCTTTTTGACTCTCTAAAGGACACAAATGTGATGAAATGCGGAC 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 809 CCATTTGTTACGAGTACCTTTTTGACTCTCTAAAGGACACAAATGTGATGAAATGCGGGC 868
Query 541 ACACAATGCACTTAGAATGCTACAACGAGATGATCAAACGTGACAAGTTTTGTTGTCCGA 600
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 869 ACACAATGCACGTAGAATGCTACAACGAGATGATCAAACGTGACAAGTTTTGTTGTCCAA 928
Query 601 TTTGCTCGAGGTCAGTGATTGATATGTCTAAAACATGGCAGAGACTGGATGAAGAGATCG 660
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 929 TTTGCTCGAGGTCAGTGATTGATATGTCTAAAACATGGCAGAGACTCGATGAAGAGATCG 988
Query 661 AAGCCACTGCTATGCCTTCAGATTACCGCGACAAGAAGGTTTGGATACTATGCAACGATT 720
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 989 AAGCCACTGCTATGCCTTCAGATTACCGTGACAAGAAGGTTTGGATACTTTGCAACGATT 1048
Query 721 GTAACGACACAACAGAAGTGTACTTCCACATAATAGGACAGAAATGTGGACATTGCAGAT 780
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 1049 GTAACGACACAACAGAAGTGCACTTCCACATAATCGGACAGAAATGTGGACATTGCAGAT 1108
Query 781 CTTACAACACACGAGCCATCGCGCCTCCTGTTCTTCCTCAATGACAAAACCAAGATCTTC 840
| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1109 CATACAACACACGAGCGATTGCGCCTCCTGTTCTTCCTCAATGACAAAACCAAGATCTTC 1168
Query 841 CCCATGTATTGCCTCCAAAAAGCTAA-CAA-AAGCTTTTTGTTGC-aaaaaaaCTGAGGC 897
|| |||||||||||||| ||||| || ||| || ||||||||||| ||||||||||||||
Sbjct 1169 CC-ATGTATTGCCTCCAGAAAGC-AAGCAAGAA-CTTTTTGTTGCTAAAAAAACTGAGGC 1225
Query 898 AAAAAGATTGATGATCATAACAAAGaaaaaaaaagaaaaaGATTGATAATCAATTTGATC 957
| | ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1226 ATA--GATTGATGATCATAACAAAGAAAGAAAAAGAAAAAGATTGATGATCAATTTGATC 1283
Query 958 ATTGGTCACAAAAACAAAACACACATTTGTCTTCTTCATTTGATTTGTTGTTGTTCTTAT 1017
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1284 ATTGGTCACAAAAGCAAAACACACATTTGTCTTCTTCATTTGATTTGTTGTTGTTCTTAT 1343
Query 1018 ACTGTTATATTTTACCATTTGTGTTTGGGTGTTGGCAA-GCGAGGATTATGTATAATATA 1076
||||||| ||||| ||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1344 ACTGTTACATTTTTCCATTTGTGTTTGGGTGTTGGAAATGCGAGGATTATGTATAATATA 1403
Query 1077 GTCCTCTATATATTCTTGACCCAGGAAAAGTTACCTGGATGATATGTTTTCAGGGATTTT 1136
| ||||||| | ||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1404 --C-TCTATAT-T-CTTGATCCAGGAAAAGTTACCTGGATAATATGTTTTCAGGGATTTT 1458
Query 1137 TT 1138
||
Sbjct 1459 TT 1460
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56023808220
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5