BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941395
Length=1216
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18680.1 | Symbols: AtTLP11, TLP11 | tubby like protein 11 |... 1903 0.0
> AT5G18680.1 | Symbols: AtTLP11, TLP11 | tubby like protein 11
| chr5:6228165-6230537 REVERSE LENGTH=1474
Length=1474
Score = 1903 bits (1030), Expect = 0.0
Identities = 1156/1217 (95%), Gaps = 8/1217 (1%)
Strand=Plus/Plus
Query 1 TAAGTATCCCCACAAGTCGTATGACCTTACGTAGCTTAATCCTTGAGATGCGTTCGAGGC 60
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 92 TAAGTATCCCCAGAAGTCGTATGACCTTACGTAGCTTAATCCTTGAGATGCGTTCGAGAC 151
Query 61 CACATCGTGTGGTCCACGACCTTGCCGCCGCCGCCGCAGCTGCCGATTCCACTCCTGGGT 120
| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||
Sbjct 152 CGCATCGTGTGGTCCACGACCTT---GCCGCCGCCGCAGCTGCCGATTCCACTTCTGTGT 208
Query 121 CATCGCAAGATTATCGCTGGTCAGATATCCCTGAAGAGCTTCTTAGAGAGATTCTGATTC 180
||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||
Sbjct 209 CATCGCAAGATTATCGCTGGTCAGAGATTCCTGAAGAGCTTCTTAGGGAGATTCTGATTC 268
Query 181 GTGTTGAGGCGGCGGACGGTGGCGAATGGCCGTCACGACGCAGCGTGGTTGCTTGCGCCG 240
||||||| |||||||||||||||| |||||||||||||||||||||||| ||||| ||||
Sbjct 269 GTGTTGAAGCGGCGGACGGTGGCGGATGGCCGTCACGACGCAGCGTGGTGGCTTGTGCCG 328
Query 241 GCGTTTGCCGTGGCTGGCGGCTACTTATGAACGAAACCGTCGTTGTCCCTGAGATCTCTT 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 GCGTTTGTCGTGGCTGGCGGCTACTTATGAACGAAACCGTCGTTGTCCCTGAGATCTCTT 388
Query 301 CTAAGTTGACTTTCCCCATCTCTCTCAAGCAGCCTGGTCCAAGGGATTCTCTGGTTCAGT 360
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 389 CTAAGTTGACTTTCCCCATCTCTCTCAAGCAGCCTGGTCCAAGGGATTCACTGGTTCAAT 448
Query 361 GCTTTATCAAACGTAATCGAATTACGCAATCATATCATCTTTATCTCGGATTAACCAACT 420
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 449 GCTTTATCAAACGTAATCGAATTACGCAATCATATCATCTCTATCTCGGATTAACCAACT 508
Query 421 CTTTAACGGATAATGGGAAGTTTCTGCTTGCTGCGTGTAAGTTGAAGCACACAACTTGTA 480
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 509 CTTTAACGGATGATGGGAAGTTTTTGCTTGCTGCGTGTAAGTTGAAGCACACAACTTGTA 568
Query 481 CTGATTACATTATCTCTCTACGTTCTGATGATATGTCGAGGAGAAGCCAAGCGTATGTTG 540
| ||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||
Sbjct 569 CGGATTACATTATCTCTTTACGTTCTGATGATATGTCGAGAAGAAGCCAAGCTTATGTTG 628
Query 541 GCAAAGTGAGATCAAACTTCCTAGGAACAAAATTCACCGTCTTTGATGGAAATCTGCTGC 600
||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 629 GCAAAGTGAGATCGAACTTCCTAGGAACGAAATTCACTGTCTTTGATGGAAATCTGCTGC 688
Query 601 CTTCAACGGGAGCCGCTAAGTTGAGAAAGAGCCGATCTTCTAATCCCGCAAAAGTTTCAC 660
|||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 689 CTTCAACGGGAGCCGCAAAGTTGAGAAAGAGCCGATCTTATAATCCCGCAAAAGTTTCAG 748
Query 661 CAAAAGTTCCTCTTGGAAGTTACCCTGTCGCTCATATCACATACGAGCTGAATGTCTTAG 720
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 749 CAAAAGTTCCTCTTGGAAGTTATCCTGTCGCTCATATCACATATGAGCTGAATGTCTTAG 808
Query 721 GATCCCGGGGACCAAGAAAGATGCAATGTGTAATGGACACAATACCTACAAACGCAATGG 780
||||||||||||||||||||||||||||| | ||||||||||||||||||| | ||||||
Sbjct 809 GATCCCGGGGACCAAGAAAGATGCAATGTCTTATGGACACAATACCTACAAGCACAATGG 868
Query 781 AGTCC-CAAGGAGTAGCTTCAGAACCATCAGAGTTTCCCTTCCTCGGTACTCGGTCAACT 839
|| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 869 AG-CCTCAAGGAGTAGCTTCAGAACCATCAGAGTTTCCCTTACTCGGTACTCGGTCAACC 927
Query 840 TTCTCCAGGTCTCAATCGAAACCATTACGCTGCAGCTCAAGCCACCTGAAAGAAACACCA 899
|| ||||||||||| || |||||||||||| | |||||||||||||||||||||||||||
Sbjct 928 TTATCCAGGTCTCAGTCAAAACCATTACGCAGTAGCTCAAGCCACCTGAAAGAAACACCA 987
Query 900 TTAGTGCTGAGCAACAAGACACCACGGTGGCACGAGCAGCTACGTTGTTGGTGCTTGAAT 959
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 988 TTAGTGCTGAGCAACAAGACACCACGGTGGCACGAGCAGCTACGCTGCTGGTGCTTGAAT 1047
Query 960 TTCCATGGCCGTGTCACAGTAGCATCAGTGAAGAACTTTCAGCTCGTGGCATCGGCAGCA 1019
||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||| |
Sbjct 1048 TTCCATGGCCGTGTCACAGTAGCGTCAGTGAAGAACTTTCAGCTCGTGGCA--G-CAGGA 1104
Query 1020 GCTAGCGGTGGCGGTGGGACGGGATTGTCACCAGAGAGGCAGAACGAGCGGATTATATTG 1079
|||||| ||||| |||| |||||| ||||||| |||||||||| ||||||||||||||||
Sbjct 1105 GCTAGCTGTGGCAGTGGCACGGGAATGTCACCGGAGAGGCAGAGCGAGCGGATTATATTG 1164
Query 1080 CAGTTTGGGAAAGTCGGGAAAGATATGTTCACGATGGATTATGGCTACCCGATCTCAGCT 1139
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1165 CAGTTTGGGAAAGTCGGGAAAGATATGTTCACGATGGATTATGGATACCCGATCTCAGCT 1224
Query 1140 TTCCAGGCTTTTGCCATTTGCTTGAGCAGCTTTGAGACTAGAATCGCTTGTGAATGATTT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1225 TTCCAGGCTTTTGCCATTTGCTTGAGCAGCTTTGAGACTAGAATCGCTTGTGAATGATTT 1284
Query 1200 ATAAGACTTTGTTAAGA 1216
| |||||||||||||||
Sbjct 1285 ACAAGACTTTGTTAAGA 1301
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59738648550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5