BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941396
Length=415
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18690.1 | Symbols: AGP25, ATAGP25 | arabinogalactan protein... 436 6e-122
> AT5G18690.1 | Symbols: AGP25, ATAGP25 | arabinogalactan protein
25 | chr5:6233519-6234206 REVERSE LENGTH=688
Length=688
Score = 436 bits (236), Expect = 6e-122
Identities = 367/425 (86%), Gaps = 30/425 (7%)
Strand=Plus/Plus
Query 1 TCATCATTTAAA-C-AAAA-GAAATGGctttctcttttctcaa-aacatttctcatcatc 56
|||||||||||| | |||| |||||||||| ||||||||||| || | | || |||||
Sbjct 58 TCATCATTTAAACCAAAAACAAAATGGCTTTTTCTTTTCTCAATAA-A-CT-TC-TCATC 113
Query 57 atcttcatcttcatctctctctcatttccttgtctctcttcttctccgaccatttcttc- 115
|||||||||||||||| || || | | | | ||| || ||||||||||| ||||| ||
Sbjct 114 ATCTTCATCTTCATCT-TC-ATC-TCT-C-TCTCT-TCATCTTCTCCGACAATTTC-TCT 166
Query 116 cttccAACAGCTTTCGCCTGAGATCGCCCCTCTCCTCCCTTCCCCCGGTGACGCTTTACC 175
| ||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||
Sbjct 167 CGTCCAACAGCTTTCACCGGAGATCGCCCCTCTCCTCCCTTCCCCCGGAGACGCTTTACC 226
Query 176 TTCAGGCGACGGCAGCGGCACAATCCCATCTTCACCAAGCCCTCCTGATCCCGACACTAA 235
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 TTCAGACGATGGCAGCGGCACAATCCCATCTTCACCAAGCCCTCCTGATCCCGACACTAA 286
Query 236 CGACGGCTCCTACCCTGACCCGTTGGCCTT-TGCTCCCTTCGCTTCGCCACCGGTTTCTT 294
||||||||||||||||||||||||||| || | |||| || ||||| || ||||||||||
Sbjct 287 CGACGGCTCCTACCCTGACCCGTTGGCATTCT-CTCCTTTTGCTTCTCCGCCGGTTTCTT 345
Query 295 CTCCTTCTCC---GCCGTCTCATCCTCCCGCCGGAGTATTACTCCTCAC-CGTTATCTTC 350
|||||||||| |||||||| |||| |||||||||| |||||| || | | ||||| ||
Sbjct 346 CTCCTTCTCCTCCGCCGTCTCTTCCTTCCGCCGGAGTCTTACTCATCTCTC-TTATCATC 404
Query 351 TCCTCCGCGTCGCTCGGGCTTCGTAGCGTAATAACACTACTATAGTTCACTTCGCTTATA 410
|||||||| | ||| ||| |||||| |||||||||||||||||||||||||||||
Sbjct 405 TCCTCCGC--C--TCG---TTCCTAGCGTTATAACACTACTATAGTTCACTTCGCTTATC 457
Query 411 CATCA 415
|||||
Sbjct 458 CATCA 462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19654689859
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5