BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg941399
Length=3269
Score E
Sequences producing significant alignments: (Bits) Value
AT5G18740.1 | Symbols: | Domain of unknown function (DUF3444) ... 599 6e-170
AT5G18720.1 | Symbols: | Domain of unknown function (DUF3444) ... 566 6e-160
AT5G18730.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Molecular... 425 1e-117
> AT5G18740.1 | Symbols: | Domain of unknown function (DUF3444)
| chr5:6249727-6252042 FORWARD LENGTH=2099
Length=2099
Score = 599 bits (324), Expect = 6e-170
Identities = 714/895 (80%), Gaps = 56/895 (6%)
Strand=Plus/Plus
Query 2124 CACTGGTCATATT-GCTGTCAT-CCCAAGAAAAGGCGAGACTTGGGC-ATTGTTCAAGAA 2180
|||| ||||| || | ||| || ||| ||| |||||||||| ||||| || ||||||||
Sbjct 968 CACTTGTCATTTTAG-TGT-ATCCCCTAGAGAAGGCGAGACATGGGCGCTT-TTCAAGAA 1024
Query 2181 CTGGGATATTAACTGGTCTTCAGAGCCAGATTCTCACCGCAAATCTGAGTATGAATTTGT 2240
|||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 1025 CTGGGATATTAAGTGGTCTTCAGAGCCAGATTCTCACCGCAAATATGAGTACGAATTTGT 1084
Query 2241 CGAAATTTTGTCAGATTACGCTGATGGAGCTGGTGTATCTGTTGCGTTCTTGCATAAAGC 2300
||| ||| |||||||||||||||||| ||||||||||| |||||| | ||| ||||||||
Sbjct 1085 CGAGATTCTGTCAGATTACGCTGATGAAGCTGGTGTATATGTTGCATACTTACATAAAGC 1144
Query 2301 AAAAGGCTTTGCAAGTGTGTTCTTTCGATTGGGAACTAGTAATGCAGACATATCGCAG-A 2359
|||||| ||||| ||||||||| | ||| |||||||| || ||| || |||| | | |
Sbjct 1145 AAAAGGATTTGCTAGTGTGTTCCTCCGAATGGGAACTGGTTATGAAGGTATATTTC-GTA 1203
Query 2360 TTCTACCTCACAGTTTATATCGGTTCTCCCATAGGATTCCTTCCTTCAACCTGACTGGAA 2419
|| |||||| |||||| |||||||||||||||||| | ||||||||||| ||||| |||
Sbjct 1204 TTTTACCTCGCAGTTTGTATCGGTTCTCCCATAGGGTCCCTTCCTTCAAACTGACAGGAG 1263
Query 2420 TTGCA-GGAAAAGGTATGCCAAAAGATGCTTACGAGCTGGACCAAGCT-CTATTACCTGA 2477
| | | ||||||| |||||||||||||||||| ||||| ||||||||| | ||||| ||
Sbjct 1264 T-GAAAGGAAAAGATATGCCAAAAGATGCTTATGAGCTAGACCAAGCTGCC-TTACCAGA 1321
Query 2478 AACAATCGATGAGATAATTGTCCCTCCACA-TCT-ATTAGCAG-A----GCCTAAAC-CA 2529
|||||| || ||||| ||||| ||| || | ||| | |||| | | |||||| |
Sbjct 1322 AACAATTGAAGAGATCATTGTGCCTTCAAACTCTGAG-AGCAATATAAAGTCTAAACGCC 1380
Query 2530 GAAGCTC-TCTACTTTCCTCGTGATGGAAAGGTTTTCCAAACTGGCCAGATCTGGTCATT 2588
|||| | ||||| || || | | ||| ||||||| || ||||||||||||||||||||
Sbjct 1381 -AAGC-CATCTACATTGCTAGCAAGGGATAGGTTTTTCAGACTGGCCAGATCTGGTCATT 1438
Query 2589 TTACTA-TGGTAACGTTAACTTGCCTCTATACTACTG-TAGGATACA-AAGGATCACTTT 2645
|||| | |||| | | | | |||||||| ||||| || |||||| || ||| ||||||||
Sbjct 1439 TTAC-AGTGGTTATGATGATTTGCCTCTGTACTA-TGGTAGGATTCAGAAG-ATCACTTT 1495
Query 2646 AACTCAGGCATTCGAGCAGGAAGCAG-AATTTAAACTAT-CTGTAAGTCGGTTAAAGACT 2703
||||||||||| ||||||| | | |||| |||||| | || ||||| ||||| ||
Sbjct 1496 TACTCAGGCATTTAAGCAGGACCCTGTAATT-AAACTACACA-TAGGTCGGCTAAAGGCT 1553
Query 2704 AATCCTTTCCC-TGAGAATGTCATTC-AGTGGGAGGACAAG-AGAATGCCTGTTGGCTGT 2760
| || ||||| | || |||| || | | ||||| |||| | | |||||||||||| |||
Sbjct 1554 AC-CCATTCCCCTAAGGATGTTAT-CGACTGGGAAGACAGGCA-AATGCCTGTTGGTTGT 1610
Query 2761 GGAACTTTCT-CGGTGAGGAAATGTT-TCGAAGTACTCACTCCAGATGATGTTTTACATC 2818
||||| |||| | | | |||| ||| | ||| || |||| ||| |||| |||| |||||
Sbjct 1611 GGAACATTCTAC--TCAAGAAACGTTCTAGAAATAATCACCCCAAATGAGGTTTCACATC 1668
Query 2819 AGATAGTGTC-TCAAACCTCCATGGATGGAAATGATTATACCATTCTTCCCAAGATTGGG 2877
|| |||| || ||||||||| |||||||| | ||| ||||| ||||| |||||||||||
Sbjct 1669 AGGTAGT-TCCTCAAACCTCAATGGATGGCATTGAATATACTATTCTACCCAAGATTGGT 1727
Query 2878 GATGTTTGGGCCATATACAGATTCTGGACTTGTCACAAGGA-GTTCAAGGACATTGG--T 2934
|| ||| || |||||||||| ||||| | ||| | || ||| | |||| |||| |
Sbjct 1728 GAACTTTAGGTGATATACAGATACTGGAGTAGTCTTATTGATGTTGA-GGAC-TTGGAGT 1785
Query 2935 TCCTGCAGCT--ATGACATTGTCGAAGTTCTTGATGACACTGTGGACTATAAGGT 2987
| || || ||||||| || |||||||||||||||||| |||||||||||||
Sbjct 1786 T--TGGT-CTTTATGACATGGTTGAAGTTCTTGATGACACTTTGGACTATAAGGT 1837
Score = 329 bits (178), Expect = 8e-89
Identities = 331/404 (82%), Gaps = 14/404 (3%)
Strand=Plus/Plus
Query 1705 CAAGATGCTCAAGTGGGGGCTGCAATGGGGATCTCTCTG-AATCTCGAGGCAGATAAAAA 1763
||| ||||||||||||| |||| | |||| | ||||| | ||||| |||| ||| ||||
Sbjct 508 CAA-ATGCTCAAGTGGGAGCTGTAGTGGGAAACTCTC-GAAATCTTGAGGTGGATCAAAA 565
Query 1764 CTCTGGTTTTTGTGA-T-AAAAGTTTAGAAGTTGTAGTACAACCAACGACCTCTGAATGT 1821
|||||||| ||||| | | || | || || |||||||| || || || |||| || |
Sbjct 566 TTCTGGTTTATGTGATTCAGAA--TCAGGAGGTGTAGTACCACAAAAGATTTCTGGATTT 623
Query 1822 GCCGGTCT-AAAGATCAATGACTTTGATAAACTGAGGGAAGAAGTAAAATTTGCAGTTGG 1880
|| ||| | ||| | || ||||||||||| ||||||||||||||||| || | ||||||
Sbjct 624 GCTGGTTTGAAA-TTTAACGACTTTGATAAGCTGAGGGAAGAAGTAAACTTCGAAGTTGG 682
Query 1881 CCAGGCCTGGGCTCTTTATGATACA---GATGGGATGCCTCGATTGTATGCTCTGATCAG 1937
||| |||||||| ||| |||| || ||||| |||||| ||||||||||| |||||
Sbjct 683 GCAGACCTGGGCTATTTTTGATCCAGTGGATGGAATGCCTAGATTGTATGCTAAGATCAT 742
Query 1938 AAAAGTTTCATCTCCTTGTTTTCGG-CTTAGGATCACATATCTAGAGCCAGTTCCAGGTA 1996
|||||||||| ||||||||||| || |||||||| |||||||||||||||| ||||| |
Sbjct 743 AAAAGTTTCAGCTCCTTGTTTT-GGTCTTAGGATTACATATCTAGAGCCAGATCCAGATG 801
Query 1997 ACGAGAAAGAGATCCAATGGTTTGAAGAAAACTTGCCTGTTTCTGTTGGTAACTTCAGGC 2056
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 802 GTGAGAAAGAGCTCCAATGGTTTGAAGAAGACTTGCCTGTTTCTGTTGGTAACTTCAGGC 861
Query 2057 TTGGGAAAAATCTGAACACAAAAGATCGTTCCATATTCTCTCAT 2100
||||| ||||| | |||| |||||||||| ||||| || |||
Sbjct 862 TTGGGGAAAATAAGTGCACACAAGATCGTTCAATATTTTCACAT 905
> AT5G18720.1 | Symbols: | Domain of unknown function (DUF3444)
| chr5:6244005-6246227 FORWARD LENGTH=1838
Length=1838
Score = 566 bits (306), Expect = 6e-160
Identities = 689/868 (79%), Gaps = 49/868 (6%)
Strand=Plus/Plus
Query 2145 CCCAAGAAAAGGCGAGACTTGGGC-ATTGTTCAAGAACTGGGATATTAACTGGTCTTCAG 2203
||| ||||| || ||||||||||| || |||||||||||||||||||| ||||||| |
Sbjct 672 CCCTAGAAATGGAGAGACTTGGGCGCTT-TTCAAGAACTGGGATATTAAGTGGTCTTTAA 730
Query 2204 AGCCAGATTCTCACCGCAAATCTGAGTATGAATTTGTCGAA-ATTTTGTCAGATTACGCT 2262
| ||||||||||||||||||| |||||||||||||||| || ||| ||||||||||||||
Sbjct 731 AACCAGATTCTCACCGCAAATATGAGTATGAATTTGTC-AAGATTCTGTCAGATTACGCT 789
Query 2263 GATGGAGCTGGTGTATCTGTTGCGTTCTTGCATAAAGCAAAAGGCTTTGCAAGTGTGTTC 2322
|||| | ||||||||| |||||| | |||||||||||||||||| ||||| |||||||||
Sbjct 790 GATGAAACTGGTGTATATGTTGCATACTTGCATAAAGCAAAAGGATTTGCTAGTGTGTTC 849
Query 2323 TTTCGATTGGGAACTA-GTAATGCAGACATATCGCAG-ATTCTACCTCACAGTTTATATC 2380
|||||| |||||| | || ||| || |||| | | ||| ||||||| ||||| ||||
Sbjct 850 TTTCGAATGGGAA-GAGGTTATGAAGGTATATTTC-GTATTTTACCTCAGAGTTTGTATC 907
Query 2381 GGTTCTCCCATAGGATTCCTTCCTTCAACCTGACTGGAATTGCAGGAAAAGGTATGCCAA 2440
||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||
Sbjct 908 GGTTCTCCCATAGGATTCCTTCCTT-----TGACTGGAATTGAAGGAAAAGGTGTGCCAA 962
Query 2441 AAGATGCTTACGAGCTGGACCAAGCT-CTATTACCTGAAACAATCGATGAGATAATTGTC 2499
|||||||||||||||||||| ||||| | ||||| ||||||||||| ||| | || ||
Sbjct 963 AAGATGCTTACGAGCTGGACAAAGCTGCG-TTACCAGAAACAATCGAAGAGTTCATCGTG 1021
Query 2500 CCTCCACA-TCT-AT--TAGCAGA--GCCTAAAC-CAGAAGCTCTCTACTTTCCTCGTGA 2552
||| | | ||| | || | | | |||||| | ||| | | |||||| || | |
Sbjct 1022 CCTTTAGACTCTGAGAGTAATATAAAGTCTAAACGCC-AAGATATATACTTTGCTAGCAA 1080
Query 2553 TGGAAAGGTTTTCCAAACTGGCCAGATCTGGTCATTTTACTATGGTAACG-TTAACTT-G 2610
|| || ||||| | ||||||||||| ||||||||||||| |||| | | || ||| |
Sbjct 1081 GGGTAATGTTTTTCTGACTGGCCAGATTTGGTCATTTTACTGTGGTGATGATT--CTTTG 1138
Query 2611 CCTCTATACTACTGTAGGATACA-AAGGATCACTTTAACTCAGGCATTCGA-GCAGGAAG 2668
||||| |||||| ||||||| || ||| |||||||| || |||||||| | ||||||
Sbjct 1139 CCTCTGTACTACGGTAGGATTCAGAAG-ATCACTTTTACCCAGGCATTT-ATGCAGGATC 1196
Query 2669 CAGAATTTAAACTATC-TGTAAGTCGGTTAAAGACTAATCCTTTCCCTGAGAATGTCATT 2727
| | || |||| || | | || ||||| ||||| ||| || |||||||| | |||| ||
Sbjct 1197 CTGTATGTAAATTA-CATATAGGTCGGCTAAAGGCTACTCGTTTCCCTGCGGATGTTAT- 1254
Query 2728 C-AGTGGGAGGACAAGAGAATGCCTGTTGGCTGTGGAACTTTCT-CGGTGAGGAAATGTT 2785
| | ||||| ||||| ||| ||||||||| ||||||||||||| || || ||| | |
Sbjct 1255 CGACTGGGAAAACAAGGGAACGCCTGTTGGTTGTGGAACTTTCTACGCA-AGAAAA-GCT 1312
Query 2786 -TCGAAGTACTCACTCCA-GATGATGTTTTACATCAGATAGTGTC-TCAAACCTCCATGG 2842
| ||| || |||| ||| | ||| |||| || ||||||| || ||||||||| || |
Sbjct 1313 CTAGAAATAATCACCCCAAG-TGAGGTTTCACTTCAGATAAC-TCCTCAAACCTCTATTG 1370
Query 2843 ATGGAAATGATTATACCATTCTTCCCAAGATTGGGGATGTTTGGGCCATATACAGATTCT 2902
|||| | ||| ||||||||||| ||||||||||| || ||||||| ||||||| || ||
Sbjct 1371 ATGGCATTGAATATACCATTCTCCCCAAGATTGGCGAAGTTTGGGTGATATACAAATACT 1430
Query 2903 GGACTTGTCACAAGGAGTTCA-AGGACATTGGTTCCTGCAGCT-ATGACATTGTCGAAGT 2960
||| | || ||| ||| | || ||||| || ||| ||| || || ||||||| ||| |
Sbjct 1431 GGAGTCGTGACATGGA-TGCAGAGGACTTTAGTTT-TGCTTCTTATAACATTGTTGAAAT 1488
Query 2961 TCTTGATGACAC-TGTGGACTATAAGGT 2987
|||||||||||| | |||| ||||||||
Sbjct 1489 TCTTGATGACACCT-TGGAGTATAAGGT 1515
Score = 285 bits (154), Expect = 2e-75
Identities = 242/283 (86%), Gaps = 11/283 (4%)
Strand=Plus/Plus
Query 1825 GGTCTAAAGATCAATGACTTTGA-TAAACTGAGGGAAGAAGTAAAATTTGCAGTTGGCCA 1883
|||| |||| | || |||||| | ||| ||||||||||||| ||| ||| |||||| ||
Sbjct 310 GGTCCAAAGTTTAACGACTTT-AGTAAGCTGAGGGAAGAAGCAAACTTTAAAGTTGGTCA 368
Query 1884 GGCCTGGGCTCTTTATGATAC-A--GATGGGATGCCTCGATTGTATGCTCTGATCAGAAA 1940
| ||||||| ||||||||||| | |||||||||||| |||||||||||| |||||| ||
Sbjct 369 GACCTGGGCGCTTTATGATACAATGGATGGGATGCCTAGATTGTATGCTCAGATCAGGAA 428
Query 1941 AGTTTCATCTCCTTGTTTTCGG-CTTAGGATCACATATCTAGAGCCAG-TTCCAGGTAAC 1998
||||||| ||||||||||| || |||| ||| |||||||||||||||| || || | |
Sbjct 429 AGTTTCAGCTCCTTGTTTT-GGTCTTATGATTACATATCTAGAGCCAGATT-CAAATGAT 486
Query 1999 GAGAAAGAGATCCAATGGTTTGAAGAAA-ACTTGCCTGTTTCTGTTGGTAACTTCAGGCT 2057
||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 487 GAGAAAGAGCTCCAATGGTTTGAA-AAAGACTTGCCTGTTTCTGTTGGTAACTTCAGGCT 545
Query 2058 TGGGAAAAATCTGAACACAAAAGATCGTTCCATATTCTCTCAT 2100
|||| ||||| || ||||||||||||||| ||||| || |||
Sbjct 546 TGGGGAAAATAAGAGCACAAAAGATCGTTCAATATTTTCACAT 588
> AT5G18730.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Molecular
chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609);
BEST Arabidopsis thaliana protein match is: Domain of
unknown function (DUF3444) (TAIR:AT5G18740.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr5:6246763-6249405 FORWARD LENGTH=2405
Length=2405
Score = 425 bits (230), Expect = 1e-117
Identities = 558/707 (79%), Gaps = 59/707 (8%)
Strand=Plus/Plus
Query 1411 AAGAATCGAGACACAAATTTCTTTGGAAAGGTAAGTTCCCCA---GATTTGTGCTGTGCT 1467
||||||| ||||| | ||||||||||||| | || | | || | |||| ||||||||
Sbjct 348 AAGAATCCAGACATACATTTCTTTGGAAA--T-AGATGCTCATTTGGTTTGAGCTGTGCT 404
Query 1468 ATG-AATGTTGATGAGAAGACAAAGTGGGATGAGTATTGTGAAGATT-TTAATACTGAAA 1525
| || |||| |||||||| |||| || |||||||| ||||| ||| || |||||||||
Sbjct 405 -GGTAAGGTTGGTGAGAAGAGAAAGAGGAATGAGTATGGTGAA-ATTGTTTATACTGAAA 462
Query 1526 ATTGGAGCAAGGCTGAAGATGTTATCGTAAATCTAAGTAAAGATGGCAATGGAAGACTGT 1585
|| | |||||| |||||||||||| |||||||| | | |||||| |||| |||
Sbjct 463 ATCGCAGCAAGCCTGAAGATGTTA-CGTAAATC----T----A-GGCAATAAAAGAGTGT 512
Query 1586 C-GGATGATAATGGAGATGCA-G-G-AGAAGAGTCTGGAAGCGGAAAGCAACTCCATGAG 1641
| || ||||| ||||| |||| | | |||||||||||||||||||||||||||||||||
Sbjct 513 CAGG-TGATATTGGAGGTGCAGGAGAAGAAGAGTCTGGAAGCGGAAAGCAACTCCATGAA 571
Query 1642 GTTTATCTTTGCAAAGAAACGTTGCCAAATGCCATGAACAAGAATGGTCGGCTGAGTATG 1701
|| |||||||||||||||| |||||| ||| | | |||| || | |||
Sbjct 572 ATTGATCTTTGCAAAGAAACATTGCCAGATGTCTTTAACA----TG--------A--ATG 617
Query 1702 AAACAAGATGCTCAAGTGGGGGCTGCAATGGGGATCTCTCTGAATCTCGAGGCAGATAAA 1761
| | | ||||||| | ||||||||||||||||| |||||| |||||||||||
Sbjct 618 ---C----T-C--AAGTGGGAGTTGCAATGGGGATCTCTCAGAATCTTGAGGCAGATAAT 667
Query 1762 AACTCTGGTTTT-TGTGATAAAAGTTTAGAAGTTGTAGTACAACCAACGACCTCTGAATG 1820
|||||| |||| |||||| | ||| || || || ||||| || || || |||| |||
Sbjct 668 AACTCTT-TTTTGTGTGATTCAGGTTCAGCAGGTGCAGTACCACAAAAGATTTCTGGATG 726
Query 1821 TGCCGGTCT-AAAGATCAATGACTTTGATAAACTGAGGGAAGAAGTAAAATTTGCAGTTG 1879
||| ||| | ||| | ||||||||||||| |||||||||| |||||| |||| || ||
Sbjct 727 TGCTGGTTTGAAATTT-AATGACTTTGATAGGCTGAGGGAAGGAGTAAAGTTTGAAGCTG 785
Query 1880 GCCAGGCCTGGGCTCTTTATGATAC-A-GATGG----GATGCCTCGATTGTATGCTCTGA 1933
| || |||||||| ||||| ||| | | ||| ||||||| |||||||||||| ||
Sbjct 786 GTCAAACCTGGGCTATTTATAATAATACGGTGGATCAGATGCCTAGATTGTATGCTCAGA 845
Query 1934 TCAGAAAAGTTTCATCTCCTTGTTTTCGGCTTAGGATCACATATCTAGAGCCAGTTCCAG 1993
|||||||||||||| ||||||||||| | |||||||| |||||||||||||||| |||||
Sbjct 846 TCAGAAAAGTTTCAGCTCCTTGTTTTAGTCTTAGGATTACATATCTAGAGCCAGATCCAG 905
Query 1994 GTAACGAGAAAGAGATCCAATGGTTTGAAGAAAACTTGCCTGTTTCTGTTGGTAACTTCA 2053
| |||||||||| |||||||||||| ||| |||||||||||||||||||||| ||||
Sbjct 906 ATGGTGAGAAAGAGACCCAATGGTTTGAGGAAGACTTGCCTGTTTCTGTTGGTAAATTCA 965
Query 2054 GGCTTGGGAAAAATCTGAACACAAAAGATCGTTCCATATTCTCTCAT 2100
|||||||| ||||| || |||| |||||||||||||||| || |||
Sbjct 966 GGCTTGGGGAAAATAAGAGCACACAAGATCGTTCCATATTTTCACAT 1012
Score = 244 bits (132), Expect = 3e-63
Identities = 293/366 (80%), Gaps = 29/366 (8%)
Strand=Plus/Plus
Query 981 TAGGAGTGATTTGCTTG--T-GTTGACACCCAAGAATCAGCACGAAAAAGCTCAAGCTTT 1037
||||| ||||||| ||| | | |||||||||||| ||||| ||||| |||||||||||
Sbjct 257 TAGGACTGATTTGGTTGCATCGACGACACCCAAGAACCAGCAAGAAAAGGCTCAAGCTTT 316
Query 1038 CTCCTTGCAACAACAGAATAAAGTTCCAAGTAAGAATCCAGGCACCCATTTCTTTGGAAA 1097
|||||||||||||||||| ||||| |||||||||||||||| || ||||||||||||||
Sbjct 317 CTCCTTGCAACAACAGAAGAAAGTCCCAAGTAAGAATCCAGACATACATTTCTTTGGAAA 376
Query 1098 TGA-AAGTTC-TCCAGGTTTGAGCTTTGCT-GTGAAGGTTGGTGAGAAGAGAAAGAGGAA 1154
| | | | || | |||||||||| |||| || ||||||||||||||||||||||||||
Sbjct 377 T-AGATGCTCAT-TTGGTTTGAGCTGTGCTGGT-AAGGTTGGTGAGAAGAGAAAGAGGAA 433
Query 1155 TGAGTATGGTGAAAGTTGCA-ATACTGAAAATCACAGCAAGT-TGGAAGATGTTATTGGC 1212
|||||||||||||| ||| |||||||||||| ||||||| || ||||||||| |
Sbjct 434 TGAGTATGGTGAAA-TTGTTTATACTGAAAATCGCAGCAAGCCTG-AAGATGTTAC-GTA 490
Query 1213 AGTGCTGTACACAATACTAGAAGAG-GAACCAA-TGATAATGAAAATGCAGGAAGGCTAG 1270
| | || | ||||| | ||||| | | | ||||| || | ||||||| | ||
Sbjct 491 AAT-CT--AGGCAATA--A-AAGAGTGT-C-AGGTGATATTGGAGGTGCAGGA-GA--AG 539
Query 1271 AAGCGTCTGGATGGGGGAAGCAACTTCATGAAGTTGATCGTT-CTGATGAAACATTGCCA 1329
||| ||||||| | || |||||||| |||||| |||||| || | | ||||||||||||
Sbjct 540 AAGAGTCTGGAAGCGGAAAGCAACTCCATGAAATTGATCTTTGCAAA-GAAACATTGCCA 598
Query 1330 AATGTC 1335
|||||
Sbjct 599 GATGTC 604
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 162641229206
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5